Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AL136164.4-201ENST00000625013 2135 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 AC091152.2-201ENST00000591628 2569 ntBASIC3.49□□□□□ -1.85
CCDC28AQ8IWP9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 FTLP6-201ENST00000355274 422 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.100-201ENST00000363141 102 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-522P-201ENST00000364497 107 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.378-201ENST00000365652 113 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-1035P-201ENST00000384477 107 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MIR578-201ENST00000384828 96 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MIR323B-201ENST00000385269 82 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.615-201ENST00000410769 117 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 POLHP1-201ENST00000411806 470 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC022028.1-201ENST00000412054 408 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AL591848.1-201ENST00000413092 322 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 BX682237.1-201ENST00000415016 335 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RPL21P90-201ENST00000415692 466 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 HSFY6P-201ENST00000445573 403 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RPS29P31-201ENST00000446147 164 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 EIF4EBP2P1-201ENST00000450009 343 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 SSXP4-201ENST00000451349 245 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AL590639.1-201ENST00000456484 337 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RNU7-167P-201ENST00000459160 62 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC007547.1-201ENST00000462177 490 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AP000852.1-201ENST00000472460 573 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MTCO2P30-201ENST00000503662 364 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC009901.1-201ENST00000506703 541 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC010486.1-201ENST00000511793 424 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-189P-201ENST00000516120 101 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.665-201ENST00000516177 98 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 RNU6-1038P-201ENST00000516516 104 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC023050.3-201ENST00000541142 333 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MTCO3P23-201ENST00000561363 289 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MIR3941-201ENST00000582572 103 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 MIR3609-201ENST00000582661 80 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC234771.5-201ENST00000600161 514 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC064801.1-201ENST00000612025 407 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 AC090617.10-201ENST00000624308 134 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 INTS6P1-201ENST00000504674 2530 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 CEP170P1-201ENST00000502249 4587 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 IPO8P1-201ENST00000455509 3109 ntBASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CCDC28AQ8IWP9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 RN7SKP95-201ENST00000362860 303 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 Y_RNA.279-201ENST00000364763 95 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 MIR105-2-201ENST00000385083 81 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 RPS4XP9-201ENST00000405151 780 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 HSPE1P12-201ENST00000412576 301 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 RSU1P3-201ENST00000412878 835 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC098614.3-201ENST00000438957 440 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AL360271.2-201ENST00000447710 161 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 RPS23P1-201ENST00000491662 432 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 HIGD1AP13-201ENST00000509878 289 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC008716.1-201ENST00000511084 513 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 IGKV1-32-201ENST00000519290 311 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AP000676.2-201ENST00000529711 301 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC105129.1-201ENST00000560250 297 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 MIR4646-201ENST00000580775 63 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC005730.3-201ENST00000583067 366 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC011712.1-201ENST00000588959 234 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 BPIFA4P-203ENST00000603168 689 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC092747.3-201ENST00000603769 301 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AL391358.1-201ENST00000605342 190 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 Z82243.1-201ENST00000609432 473 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC068831.7-201ENST00000616954 363 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms