Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 ANP32BP3-201ENST00000559213 706 ntBASIC1.84□□□□□ -2.12
CCDC88AQ3V6T2 AC025263.3-201ENST00000622965 1396 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC006026.1-201ENST00000444025 1803 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC011477.1-204ENST00000623416 1325 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-619P-201ENST00000365146 108 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-921P-201ENST00000384361 107 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 RNA5SP252-201ENST00000391131 119 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 HMGN2P19-201ENST00000425149 265 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC009474.2-201ENST00000451383 136 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 RNU6-1095P-201ENST00000516148 108 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 ERHP1-201ENST00000523006 310 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AL137100.2-201ENST00000555786 315 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 KATNBL1P5-201ENST00000605015 517 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC097504.2-201ENST00000608088 454 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 MIR6840-201ENST00000611937 71 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AL512506.2-201ENST00000624472 458 ntBASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC88AQ3V6T2 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC098614.2-201ENST00000426040 255 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 RNF2P1-201ENST00000442955 1010 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 BX248409.1-201ENST00000455497 255 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC104164.3-201ENST00000467363 1258 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC048346.1-201ENST00000510247 144 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC136443.5-201ENST00000603741 370 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC106028.5-201ENST00000610332 395 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 RNU1-93P-201ENST00000364704 169 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 MTCO3P12-201ENST00000416718 547 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AL354695.1-201ENST00000427935 228 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 HMGN2P18-201ENST00000450680 270 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC010099.1-201ENST00000455434 375 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC022493.1-201ENST00000492984 337 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC104108.1-201ENST00000509930 412 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AL359273.1-201ENST00000510918 627 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC025755.1-201ENST00000521306 278 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 CASP1P1-201ENST00000526345 212 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 GLYCAM1-201ENST00000546596 285 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 MTATP6P3-201ENST00000581686 676 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC105224.1-201ENST00000587055 421 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 HSPE1P7-201ENST00000604681 321 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 BNIP3P4-201ENST00000604946 565 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC079791.1-201ENST00000605356 973 ntBASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88AQ3V6T2 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 SDAD1P2-201ENST00000441308 2028 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 DEFB108F-201ENST00000344638 222 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 RNU1-105P-201ENST00000363470 161 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AL356320.2-201ENST00000417263 507 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 UBE2V1P13-201ENST00000436983 439 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 RPL12P25-201ENST00000455592 494 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 ARL2BPP5-201ENST00000523141 481 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 DEFB108D-201ENST00000527787 222 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 CYCSP26-201ENST00000534107 320 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AL138976.2-201ENST00000563989 694 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC090666.1-201ENST00000578241 445 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC013553.2-201ENST00000604244 589 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC006329.2-201ENST00000611491 394 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 AC009318.4-201ENST00000620496 486 ntBASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88AQ3V6T2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms