Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 AL354798.1-201ENST00000622505 329 ntBASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 AL359693.1-201ENST00000614959 2407 ntBASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 OR4G1P-203ENST00000641984 1631 ntBASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CCDC144BQ3MJ40 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 Y_RNA.157-201ENST00000363638 102 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 Y_RNA.534-201ENST00000384599 112 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AL160275.3-201ENST00000423876 471 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 SNRPEP4-201ENST00000435815 279 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 TBCAP1-201ENST00000436520 327 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 SNORA71B-202ENST00000439232 272 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AL353572.1-201ENST00000442490 417 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 HMGN2P7-201ENST00000456186 273 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 RNU7-180P-201ENST00000459240 63 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC074344.1-201ENST00000512823 224 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 RNA5SP471-201ENST00000516971 106 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 SUB1P1-201ENST00000524415 382 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 uc_338.34-201ENST00000617467 174 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 AC010338.1-201ENST00000621823 717 ntBASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC144BQ3MJ40 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 RNA5SP124-201ENST00000362739 110 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 Y_RNA.88-201ENST00000363029 99 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 RNU6-213P-201ENST00000384051 104 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 RNU1-89P-201ENST00000384592 164 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 SNORA1.3-201ENST00000384676 136 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC092047.1-201ENST00000424997 240 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC008264.1-201ENST00000447612 367 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC069439.1-201ENST00000494739 167 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 SUMO2P20-201ENST00000520803 283 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC134698.4-201ENST00000523451 826 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC106782.4-201ENST00000568264 210 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC020914.4-201ENST00000597690 277 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL592436.1-201ENST00000605135 558 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC009570.1-201ENST00000609599 745 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC012531.5-201ENST00000611375 151 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL390240.1-201ENST00000612950 384 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL121772.2-201ENST00000614331 297 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AP003122.6-201ENST00000623831 495 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL512643.1-201ENST00000635735 524 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL773545.4-201ENST00000637262 310 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AL513478.4-201ENST00000641636 310 ntBASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC144BQ3MJ40 AC106871.1-201ENST00000568324 3102 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AF127577.6-201ENST00000623352 2191 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 MIR208A-201ENST00000362287 71 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AL592045.1-201ENST00000429867 352 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AL512844.2-201ENST00000433990 593 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AC092573.2-201ENST00000434546 243 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 MTND3P10-201ENST00000450967 341 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 MTND3P16-201ENST00000452205 344 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 HMGB3P15-201ENST00000507326 574 ntBASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC144BQ3MJ40 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms