Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 MIR7702-201ENST00000621931 59 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
HOXD3P31249 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD3P31249 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD3P31249 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD3P31249 HSPA8P4-201ENST00000511877 1920 ntBASIC3.19□□□□□ -1.9
HOXD3P31249 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD3P31249 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 AC116667.1-201ENST00000604855 2072 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 USP8P1-201ENST00000494673 3183 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 FRG1CP-201ENST00000358464 769 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 Y_RNA.100-201ENST00000363141 102 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 SNORA7.2-201ENST00000364446 145 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 U3.12-201ENST00000364498 214 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 RNU6-335P-201ENST00000364563 113 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 RNU6-1011P-201ENST00000384668 107 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 MIR607-201ENST00000385241 96 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXD3P31249 FAT1P1-201ENST00000406588 507 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 HSPE1P8-201ENST00000406997 288 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD3P31249 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXD3P31249 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 ANP32BP2-201ENST00000454525 545 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 HSPE1P6-201ENST00000479457 291 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AL049874.1-201ENST00000489560 388 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 RPL29P14-201ENST00000495837 428 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AC009901.1-201ENST00000506703 541 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 TBCAP3-201ENST00000512475 312 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD3P31249 SNORA70.14-201ENST00000516205 110 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 Y_RNA.701-201ENST00000516812 110 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 RNU6-352P-201ENST00000516908 107 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 RN7SKP258-201ENST00000517151 304 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 ERHP1-201ENST00000523006 310 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD3P31249 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD3P31249 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
HOXD3P31249 AC120057.2-201ENST00000571520 271 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXD3P31249 AC104237.2-201ENST00000612456 443 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 AP003400.5-201ENST00000624827 617 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
HOXD3P31249 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXD3P31249 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 PRO1804-201ENST00000623780 2050 ntBASIC3.18□□□□□ -1.9
HOXD3P31249 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD3P31249 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
HOXD3P31249 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HOXD3P31249 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 AC103710.2-202ENST00000641454 2853 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 SNORA51.2-201ENST00000364595 132 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 MIR200C-201ENST00000384980 68 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 SNORD70.1-201ENST00000391007 85 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AL590704.1-201ENST00000402856 794 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 RNU4-46P-201ENST00000410818 138 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AL445584.1-201ENST00000431451 330 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC007389.2-201ENST00000434630 306 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC006011.1-201ENST00000442758 349 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC007677.1-201ENST00000445757 515 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD3P31249 CEACAMP4-201ENST00000457676 421 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 snoU13.22-201ENST00000459428 104 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 RPS26P28-201ENST00000470806 348 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 RPL7P43-201ENST00000478876 753 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC108860.1-201ENST00000484521 383 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 Y_RNA.654-201ENST00000497848 106 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD3P31249 SNORA31.3-201ENST00000516029 96 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 IGLV3-26-201ENST00000520756 302 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 SNRPGP16-201ENST00000533275 226 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD3P31249 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms