Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HMGN3P1-201ENST00000453847 193 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 NF1P3-201ENST00000457709 450 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.81□□□□□ -2.12
COL5A3P25940 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
COL5A3P25940 HMGB1P38-201ENST00000490557 577 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC1.81□□□□□ -2.12
COL5A3P25940 AC118942.1-201ENST00000529674 1035 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.81□□□□□ -2.12
COL5A3P25940 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.81□□□□□ -2.12
COL5A3P25940 ZNF971P-201ENST00000562068 1249 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.81□□□□□ -2.12
COL5A3P25940 AC107954.1-201ENST00000565906 727 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 SNORD84-203ENST00000584275 78 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AL022067.1-201ENST00000602426 454 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AL020997.3-201ENST00000602843 359 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AL133445.2-201ENST00000611191 527 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 RNU6-1192P-201ENST00000612197 107 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 RNU6-489P-201ENST00000618289 107 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AC022306.3-201ENST00000619930 550 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 MIR6734-201ENST00000621166 68 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 AL356118.1-201ENST00000635272 1078 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 MTND4P8-201ENST00000514997 1362 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 OR4G1P-203ENST00000641984 1631 ntBASIC1.81□□□□□ -2.12
COL5A3P25940 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
COL5A3P25940 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
COL5A3P25940 RNU6-1243P-201ENST00000364028 107 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MIR620-201ENST00000385232 95 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 RNU4-65P-201ENST00000410473 140 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.8□□□□□ -2.12
COL5A3P25940 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 UBBP3-201ENST00000445497 241 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MTND1P33-201ENST00000446251 917 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MTATP6P14-201ENST00000455189 673 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 MTCYBP18-201ENST00000501056 747 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 SCARNA1-201ENST00000517138 166 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC087373.1-201ENST00000524920 491 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 LRRC6P1-201ENST00000532188 885 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC004217.3-201ENST00000551552 878 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 MIR5694-201ENST00000581190 76 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC013468.1-201ENST00000608680 598 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC018645.2-201ENST00000609151 472 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AL391834.2-201ENST00000609982 546 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC018926.3-201ENST00000618841 406 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL5A3P25940 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL5A3P25940 AC135776.4-201ENST00000624300 1904 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 SNORA6-201ENST00000384033 151 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 RNU6-298P-201ENST00000390888 96 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
COL5A3P25940 AL603865.2-201ENST00000401679 213 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MTCYBP24-201ENST00000420387 1106 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 USP9YP21-201ENST00000420603 432 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC244505.5-201ENST00000443639 207 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MRPL42P4-201ENST00000453267 443 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC092155.2-201ENST00000454675 477 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC092991.1-201ENST00000477176 376 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.8□□□□□ -2.12
COL5A3P25940 MRPL42P6-201ENST00000486397 371 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 TPT1P8-201ENST00000510120 555 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.8□□□□□ -2.12
COL5A3P25940 SNORA19.3-201ENST00000516165 130 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 RNU6-416P-201ENST00000516265 103 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 RNA5SP220-201ENST00000516298 104 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 RNA5SP364-201ENST00000516938 78 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 IGKV2D-36-201ENST00000518643 226 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.8□□□□□ -2.12
COL5A3P25940 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.8□□□□□ -2.12
COL5A3P25940 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC1.8□□□□□ -2.12
COL5A3P25940 NIFKP8-201ENST00000560500 874 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.8□□□□□ -2.12
COL5A3P25940 BNIP3P39-201ENST00000601077 554 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC080078.3-201ENST00000605407 463 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AL121652.1-201ENST00000608851 448 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC008083.4-201ENST00000615076 444 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 MIR6515-201ENST00000619843 57 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 AC004808.1-201ENST00000627671 721 ntBASIC1.8□□□□□ -2.12
COL5A3P25940 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
COL5A3P25940 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.79□□□□□ -2.12
COL5A3P25940 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL5A3P25940 MTND5P31-201ENST00000419366 1374 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 ZNF37BP-203ENST00000452306 1352 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms