Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RN7SKP95-201ENST00000362860 303 ntBASIC5.38□□□□□ -1.55
RFX1P22670 Y_RNA.314-201ENST00000365114 102 ntBASIC5.38□□□□□ -1.55
RFX1P22670 U8.8-201ENST00000365399 135 ntBASIC5.38□□□□□ -1.55
RFX1P22670 SNORA66-201ENST00000384792 133 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AL591034.2-201ENST00000402839 359 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AL138885.1-201ENST00000405921 675 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AL513475.1-201ENST00000406602 315 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.38□□□□□ -1.55
RFX1P22670 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.38□□□□□ -1.55
RFX1P22670 AC112498.1-201ENST00000444401 332 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AC009237.8-201ENST00000445492 379 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AL031274.1-201ENST00000450334 232 ntBASIC5.38□□□□□ -1.55
RFX1P22670 COX6B1P5-201ENST00000509843 249 ntBASIC5.38□□□□□ -1.55
RFX1P22670 RNU6-1073P-201ENST00000517182 106 ntBASIC5.38□□□□□ -1.55
RFX1P22670 RNU6-794P-201ENST00000517261 64 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AF186190.1-201ENST00000517470 480 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AC109479.2-201ENST00000517842 174 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AC025755.1-201ENST00000521306 278 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AC022616.4-201ENST00000522985 181 ntBASIC5.38□□□□□ -1.55
RFX1P22670 AC008033.2-201ENST00000542626 177 ntBASIC5.38□□□□□ -1.55
RFX1P22670 RN7SL435P-201ENST00000584418 282 ntBASIC5.38□□□□□ -1.55
RFX1P22670 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.38□□□□□ -1.55
RFX1P22670 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.38□□□□□ -1.55
RFX1P22670 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.38□□□□□ -1.55
RFX1P22670 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RFX1P22670 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RFX1P22670 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.38□□□□□ -1.55
RFX1P22670 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
RFX1P22670 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RFX1P22670 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RFX1P22670 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.38□□□□□ -1.55
RFX1P22670 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.37□□□□□ -1.55
RFX1P22670 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 AL731532.2-201ENST00000623542 1953 ntBASIC5.37□□□□□ -1.55
RFX1P22670 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
RFX1P22670 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
RFX1P22670 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.37□□□□□ -1.55
RFX1P22670 RNU6-238P-201ENST00000363313 106 ntBASIC5.37□□□□□ -1.55
RFX1P22670 RNA5SP505-201ENST00000364748 108 ntBASIC5.37□□□□□ -1.55
RFX1P22670 Y_RNA.380-201ENST00000365663 111 ntBASIC5.37□□□□□ -1.55
RFX1P22670 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 Y_RNA.424-201ENST00000384063 103 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.37□□□□□ -1.55
RFX1P22670 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.37□□□□□ -1.55
RFX1P22670 AC006946.1-201ENST00000429106 328 ntBASIC5.37□□□□□ -1.55
RFX1P22670 CBX3P6-201ENST00000430257 527 ntBASIC5.37□□□□□ -1.55
RFX1P22670 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.37□□□□□ -1.55
RFX1P22670 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.37□□□□□ -1.55
RFX1P22670 AC105758.1-201ENST00000506038 399 ntBASIC5.37□□□□□ -1.55
RFX1P22670 MRPS35P2-201ENST00000508242 191 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AP000889.1-201ENST00000530968 660 ntBASIC5.37□□□□□ -1.55
RFX1P22670 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 HSBP1P1-201ENST00000555205 166 ntBASIC5.37□□□□□ -1.55
RFX1P22670 MIR4472-2-201ENST00000582069 67 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.37□□□□□ -1.55
RFX1P22670 AC016727.2-201ENST00000603988 621 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AC124312.5-201ENST00000604451 268 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AC090425.1-201ENST00000610007 140 ntBASIC5.37□□□□□ -1.55
RFX1P22670 AC112200.1-201ENST00000625015 234 ntBASIC5.37□□□□□ -1.55
RFX1P22670 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.37□□□□□ -1.55
RFX1P22670 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.37□□□□□ -1.55
RFX1P22670 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.37□□□□□ -1.55
RFX1P22670 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
RFX1P22670 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.55
RFX1P22670 AC007785.2-201ENST00000598627 1916 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RPL9P7-201ENST00000330965 580 ntBASIC5.36□□□□□ -1.55
RFX1P22670 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-37P-201ENST00000362692 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 Y_RNA.48-201ENST00000362710 103 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-11P-201ENST00000364234 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-450P-201ENST00000364654 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNVU1-6-201ENST00000364688 164 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-99P-201ENST00000364721 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-7-201ENST00000364784 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-1318P-201ENST00000365389 103 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-8-201ENST00000365467 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RHOT1P2-201ENST00000366423 333 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-25P-201ENST00000383873 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-1-201ENST00000383898 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-48P-201ENST00000384161 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-36P-201ENST00000384172 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-4P-201ENST00000384205 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-5P-201ENST00000384238 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-3P-201ENST00000384314 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-16P-201ENST00000384385 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 SNORA70.10-201ENST00000384515 134 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-15P-201ENST00000384534 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-2-201ENST00000384627 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-29P-201ENST00000384637 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-9-201ENST00000384776 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-33P-201ENST00000384793 107 ntBASIC5.36□□□□□ -1.55
RFX1P22670 MIR23A-201ENST00000385245 73 ntBASIC5.36□□□□□ -1.55
RFX1P22670 RNU6-1109P-201ENST00000391187 107 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms