Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 C1DP4-201ENST00000455429 424 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC109925.1-201ENST00000478069 331 ntBASIC3.17□□□□□ -1.9
MSH3P20585 HMGB1P29-201ENST00000505659 499 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH3P20585 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH3P20585 RNU1-143P-201ENST00000516296 146 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNA5SP468-201ENST00000516782 93 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNA5SP380-201ENST00000517190 98 ntBASIC3.17□□□□□ -1.9
MSH3P20585 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH3P20585 AC245166.1-201ENST00000521012 253 ntBASIC3.17□□□□□ -1.9
MSH3P20585 HMGN1P28-201ENST00000521340 364 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC022616.3-201ENST00000523940 148 ntBASIC3.17□□□□□ -1.9
MSH3P20585 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.17□□□□□ -1.9
MSH3P20585 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH3P20585 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH3P20585 AC087883.1-201ENST00000551882 391 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC125611.2-201ENST00000551907 647 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH3P20585 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.17□□□□□ -1.9
MSH3P20585 MIR4474-201ENST00000579189 78 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH3P20585 MIR2682-201ENST00000580305 110 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH3P20585 AL022099.1-201ENST00000604551 712 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC007179.3-201ENST00000604976 235 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC103710.2-201ENST00000609912 942 ntBASIC3.17□□□□□ -1.9
MSH3P20585 U1.23-201ENST00000610293 146 ntBASIC3.17□□□□□ -1.9
MSH3P20585 uc_338.25-201ENST00000613756 156 ntBASIC3.17□□□□□ -1.9
MSH3P20585 RNU1-68P-201ENST00000615382 146 ntBASIC3.17□□□□□ -1.9
MSH3P20585 MIR7112-201ENST00000616126 65 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC006338.1-201ENST00000618453 749 ntBASIC3.17□□□□□ -1.9
MSH3P20585 U1.39-201ENST00000621562 146 ntBASIC3.17□□□□□ -1.9
MSH3P20585 AC124864.2-201ENST00000624736 186 ntBASIC3.17□□□□□ -1.9
MSH3P20585 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH3P20585 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
MSH3P20585 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSH3P20585 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
MSH3P20585 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.16□□□□□ -1.9
MSH3P20585 MIR148B-201ENST00000362252 99 ntBASIC3.16□□□□□ -1.9
MSH3P20585 RNU6-223P-201ENST00000362830 107 ntBASIC3.16□□□□□ -1.9
MSH3P20585 SNORA20.2-201ENST00000383922 131 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AL109755.1-201ENST00000401791 649 ntBASIC3.16□□□□□ -1.9
MSH3P20585 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH3P20585 RPS3AP24-201ENST00000407896 734 ntBASIC3.16□□□□□ -1.9
MSH3P20585 RNU4-47P-201ENST00000410876 114 ntBASIC3.16□□□□□ -1.9
MSH3P20585 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH3P20585 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 OR2AS1P-201ENST00000427827 319 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC004866.2-201ENST00000438285 481 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 AL121871.1-201ENST00000443413 436 ntBASIC3.16□□□□□ -1.9
MSH3P20585 Z75741.1-201ENST00000446793 314 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC132479.1-201ENST00000449160 144 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
MSH3P20585 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH3P20585 RPS15AP36-201ENST00000492022 382 ntBASIC3.16□□□□□ -1.9
MSH3P20585 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 MTND4LP22-201ENST00000508209 276 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH3P20585 AC026801.2-201ENST00000515352 425 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.16□□□□□ -1.9
MSH3P20585 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.16□□□□□ -1.9
MSH3P20585 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
MSH3P20585 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.16□□□□□ -1.9
MSH3P20585 AC124947.2-202ENST00000552735 133 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH3P20585 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH3P20585 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH3P20585 SNORD84-203ENST00000584275 78 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC012468.1-201ENST00000604888 430 ntBASIC3.16□□□□□ -1.9
MSH3P20585 MIR98-201ENST00000606724 119 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AF250324.2-201ENST00000608299 610 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AL591516.1-201ENST00000611326 274 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC092794.1-201ENST00000612734 582 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AL603758.1-201ENST00000618654 241 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AL158209.2-201ENST00000619266 216 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AC073534.2-201ENST00000620377 381 ntBASIC3.16□□□□□ -1.9
MSH3P20585 AL136313.1-201ENST00000624804 202 ntBASIC3.16□□□□□ -1.9
MSH3P20585 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
MSH3P20585 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH3P20585 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
MSH3P20585 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.15□□□□□ -1.9
MSH3P20585 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
MSH3P20585 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
MSH3P20585 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
MSH3P20585 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.15□□□□□ -1.9
MSH3P20585 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
MSH3P20585 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
MSH3P20585 RNU6-181P-201ENST00000363225 107 ntBASIC3.15□□□□□ -1.91
MSH3P20585 RNU6-282P-201ENST00000365357 103 ntBASIC3.15□□□□□ -1.91
MSH3P20585 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
MSH3P20585 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.15□□□□□ -1.91
MSH3P20585 PPP1R11P2-201ENST00000423543 382 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC137499.1-201ENST00000427602 88 ntBASIC3.15□□□□□ -1.91
MSH3P20585 MTCO2P11-201ENST00000431069 680 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AL451074.3-201ENST00000437709 472 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC005094.1-201ENST00000440420 368 ntBASIC3.15□□□□□ -1.91
MSH3P20585 ELOCP23-201ENST00000452014 332 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms