Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC112653.1-201ENST00000443851 386 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXD4P09016 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXD4P09016 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 MTCYBP1-201ENST00000454315 1119 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AP1S2P1-201ENST00000457344 379 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC012181.1-201ENST00000479895 423 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 RN7SKP298-201ENST00000515950 94 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 SNORA18.6-201ENST00000516792 115 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 RNU6-201P-201ENST00000517100 61 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 SCARNA20.6-201ENST00000517251 106 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AP003467.2-201ENST00000520175 319 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC022616.6-201ENST00000520479 119 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC009063.1-201ENST00000563342 702 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AP005205.1-201ENST00000563503 508 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AC137800.2-201ENST00000574375 120 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 MIR2682-201ENST00000580305 110 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC060771.1-201ENST00000582031 164 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXD4P09016 AL359999.1-201ENST00000604513 294 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL021997.1-201ENST00000605757 193 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL391813.2-201ENST00000609113 322 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 OR10AB1P-201ENST00000609613 938 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL355472.4-201ENST00000610233 626 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC087241.4-201ENST00000612441 480 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC009159.1-201ENST00000618386 642 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC026585.1-201ENST00000619582 524 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC012150.2-201ENST00000621300 544 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AL353748.2-201ENST00000622148 471 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 AC099506.2-201ENST00000623074 221 ntBASIC2.85□□□□□ -1.95
HOXD4P09016 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD4P09016 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD4P09016 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
HOXD4P09016 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD4P09016 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD4P09016 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD4P09016 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HOXD4P09016 RNU6-114P-201ENST00000384704 105 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 U3.20-201ENST00000390909 217 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 UBE2V1P2-201ENST00000397758 440 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 FCF1P10-201ENST00000407590 479 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 SPA17P1-201ENST00000416656 452 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 YPEL5P1-201ENST00000419731 367 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AL353777.1-201ENST00000425552 326 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 MTND1P34-201ENST00000438556 671 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD4P09016 RPL17P49-201ENST00000443728 411 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 RPL39P40-201ENST00000445481 146 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 RPL23AP31-201ENST00000456160 467 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 ST13P14-201ENST00000474095 734 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC138853.1-201ENST00000503549 823 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD4P09016 RPL37P25-201ENST00000507308 276 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD4P09016 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.84□□□□□ -1.95
HOXD4P09016 AP003181.2-201ENST00000528941 181 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXD4P09016 AC034105.3-201ENST00000565294 442 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 EIF1P4-201ENST00000572664 335 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD4P09016 BDH2P1-201ENST00000602288 736 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC090578.1-201ENST00000604955 591 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC108747.1-201ENST00000609508 535 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC002550.2-201ENST00000621246 394 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AL356585.4-201ENST00000623078 1229 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 AC095031.1-201ENST00000623685 672 ntBASIC2.84□□□□□ -1.95
HOXD4P09016 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HOXD4P09016 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXD4P09016 AC000403.1-201ENST00000613696 3585 ntBASIC2.84□□□□□ -1.96
HOXD4P09016 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD4P09016 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD4P09016 AF117829.1-206ENST00000621883 3802 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC004944.1-201ENST00000517807 3059 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 FRG1BP-201ENST00000278882 761 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 RNU1-70P-201ENST00000362618 164 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 U8.3-201ENST00000363321 132 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 SNORA5B-201ENST00000363786 132 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 RNY4P34-201ENST00000364779 95 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
HOXD4P09016 RPS3AP36-201ENST00000398190 775 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 RNA5SP229-201ENST00000410809 99 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AF274854.1-201ENST00000413236 615 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AL137014.1-201ENST00000420490 1226 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD4P09016 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
HOXD4P09016 AL049734.2-201ENST00000441066 616 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms