Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.39-201ENST00000362620 98 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 RNU1-83P-201ENST00000363426 164 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 SNORA41-201ENST00000384675 132 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 MIR135A2-201ENST00000384854 100 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 MIR517A-201ENST00000385001 87 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-821P-201ENST00000390995 107 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC012671.1-201ENST00000451912 203 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-408P-201ENST00000515910 100 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC078899.3-201ENST00000599065 212 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 AC139713.2-215ENST00000641428 5037 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 CPHL1P-201ENST00000461341 3407 ntBASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
CHMP3Q9Y3E7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.59□□□□□ -1.52
CHMP3Q9Y3E7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-288P-201ENST00000363690 104 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.222-201ENST00000364264 102 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 SNORA70.2-201ENST00000364506 135 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.314-201ENST00000365114 102 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AL356968.1-201ENST00000416622 474 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC092017.2-201ENST00000427600 362 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RPS29P17-201ENST00000430795 166 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 OSTCP8-201ENST00000445117 448 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RPL7P23-201ENST00000493874 747 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RN7SKP122-201ENST00000515923 296 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RN7SKP60-201ENST00000516985 239 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC022616.4-201ENST00000522985 181 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC104576.1-201ENST00000524225 88 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC109446.1-201ENST00000566172 220 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 MIR3939-201ENST00000582614 106 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC125232.2-201ENST00000592457 143 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC016727.2-201ENST00000603988 621 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AL590392.1-201ENST00000604960 446 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 AC009229.4-201ENST00000623854 1947 ntBASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.58□□□□□ -1.52
CHMP3Q9Y3E7 MAPK10-304ENST00000641341 3984 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC139769.1-204ENST00000472297 1931 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.380-201ENST00000365663 111 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-45P-201ENST00000384471 107 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 RPL21P1-201ENST00000399532 476 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AL160275.3-201ENST00000423876 471 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AL591704.1-201ENST00000432574 275 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC099799.1-201ENST00000439809 192 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC108751.2-201ENST00000469993 231 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC012158.1-204ENST00000483430 465 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 RN7SL810P-201ENST00000493031 276 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC022447.4-201ENST00000504053 364 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 RNU2-53P-201ENST00000516257 147 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-307P-201ENST00000516743 106 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC103783.1-201ENST00000520506 373 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 ATP5J2P6-201ENST00000565203 266 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC005899.2-201ENST00000584353 90 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC012669.1-201ENST00000603209 283 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AC114781.5-201ENST00000615297 108 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 AL450472.3-201ENST00000615578 367 ntBASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CHMP3Q9Y3E7 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 MFSD8-242ENST00000641690 4199 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.288-201ENST00000364854 92 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-209P-201ENST00000384118 107 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.461-201ENST00000384263 103 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 MT-TW-201ENST00000387382 68 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC110754.1-201ENST00000399740 601 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RNU4-61P-201ENST00000411243 107 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-293P-201ENST00000411259 106 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 SSXP9-201ENST00000417503 292 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms