Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RNU1-136P-201ENST00000384181 164 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 U8.10-201ENST00000384260 133 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 Y_RNA.521-201ENST00000384560 114 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 Y_RNA.584-201ENST00000391090 114 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-1199P-201ENST00000411249 104 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC010095.1-201ENST00000443543 144 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RPS27P1-201ENST00000450552 247 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-625P-201ENST00000459412 107 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RN7SL193P-201ENST00000491708 276 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 SCARNA8-201ENST00000515924 131 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-453P-201ENST00000516819 85 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 IGBP1P1-201ENST00000554337 1009 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS9D1Q9Y2B5 AC068647.1-201ENST00000489539 2265 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RNU4-10P-201ENST00000364383 140 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RNA5SP122-201ENST00000384457 108 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 MIR616-201ENST00000385293 97 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RNA5SP56-201ENST00000410277 118 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RNF10P1-201ENST00000418589 369 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL714022.1-201ENST00000439897 151 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RN7SL570P-201ENST00000484405 292 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL136038.1-201ENST00000497246 351 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 RNA5SP340-201ENST00000517132 107 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC136777.2-201ENST00000522979 358 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 HMGN2P36-201ENST00000529541 409 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC133485.4-201ENST00000561835 220 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC138907.4-201ENST00000570107 226 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC005255.1-201ENST00000593748 216 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL590392.1-201ENST00000604960 446 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC090607.5-201ENST00000615692 224 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AC013791.1-201ENST00000616619 62 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 AL355834.1-201ENST00000556602 3965 ntBASIC5.74□□□□□ -1.49
VPS9D1Q9Y2B5 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 AC018555.1-201ENST00000567548 1980 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-78P-201ENST00000362897 107 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 U3.10-201ENST00000364459 214 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 Y_RNA.293-201ENST00000364908 93 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 Y_RNA.393-201ENST00000383936 102 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 SNORA29-201ENST00000384183 140 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 SNORA36C-201ENST00000384289 132 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 MIR15B-201ENST00000385045 98 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 SNORA75.5-201ENST00000391291 81 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 AC079905.1-201ENST00000549280 475 ntBASIC5.73□□□□□ -1.49
VPS9D1Q9Y2B5 uc_338.28-201ENST00000612082 187 ntBASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms