Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 OR5H6-203ENST00000642105 978 ntBASIC3.12□□□□□ -1.91
SIX2Q9NPC8 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
SIX2Q9NPC8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 SNORA51.4-201ENST00000364993 124 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 RNU6-637P-201ENST00000384050 107 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 MIR23B-201ENST00000384832 97 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 SNORA48.5-201ENST00000391143 135 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AL590004.2-201ENST00000404787 371 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 RNU6-516P-201ENST00000411381 104 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 RPS15AP12-201ENST00000419498 388 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC007283.2-201ENST00000424739 197 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC133104.1-201ENST00000429100 218 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC119618.1-201ENST00000434191 222 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC234775.1-201ENST00000454247 670 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 C1DP4-201ENST00000455429 424 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC108059.3-201ENST00000456388 214 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 RNU7-59P-201ENST00000459101 61 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 MTCO2P29-201ENST00000465212 189 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC126182.1-201ENST00000478134 357 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AL049830.2-201ENST00000480072 201 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 HMGB1P29-201ENST00000505659 499 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AF213884.2-201ENST00000510417 903 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 Vault.1-201ENST00000516474 102 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 RN7SKP272-201ENST00000516988 232 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AP004371.1-201ENST00000525240 214 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC136619.2-201ENST00000563361 631 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 TPRKBP2-201ENST00000565969 475 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 MIR3167-201ENST00000579623 85 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AP001094.1-201ENST00000579805 193 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 SNRPGP15-201ENST00000600149 222 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC007179.3-201ENST00000604976 235 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC126118.1-201ENST00000607744 628 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC007684.1-201ENST00000609671 477 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AL161734.1-201ENST00000609720 557 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC090115.4-201ENST00000609970 188 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AL590282.1-201ENST00000610379 1136 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC073534.2-201ENST00000620377 381 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 ASNSP3-201ENST00000451989 1306 ntBASIC3.11□□□□□ -1.91
SIX2Q9NPC8 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
SIX2Q9NPC8 AC010733.2-201ENST00000589496 5702 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 SNORA9.2-201ENST00000365361 133 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RNY3P13-201ENST00000365542 102 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RNU6-754P-201ENST00000391166 107 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 NDUFB4P5-201ENST00000415445 361 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RAD23BP2-201ENST00000416003 1207 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 SSXP9-201ENST00000417503 292 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 USP9YP7-201ENST00000436723 430 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RPL35AP22-201ENST00000436855 335 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AL451074.3-201ENST00000437709 472 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 USP9YP15-201ENST00000442391 422 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AL671855.1-201ENST00000446875 1203 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AL136380.1-201ENST00000447970 162 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 USP9YP32-201ENST00000452432 430 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 CEACAMP4-201ENST00000457676 421 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RPL27AP5-201ENST00000469428 449 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RPS29P26-201ENST00000477483 171 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC004924.1-201ENST00000480160 781 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC092185.1-201ENST00000491371 97 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 RNA5SP337-201ENST00000517007 109 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC087883.1-201ENST00000551882 391 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC124947.2-202ENST00000552735 133 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC087481.2-201ENST00000565492 330 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 MTATP6P3-201ENST00000581686 676 ntBASIC3.1□□□□□ -1.91
SIX2Q9NPC8 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.1□□□□□ -1.91
SIX2Q9NPC8 MIR98-201ENST00000606724 119 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms