Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 MTND1P18-201ENST00000448191 573 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 FABP5P13-201ENST00000452144 328 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 RPL37P6-201ENST00000460682 294 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AL163973.1-201ENST00000484753 577 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 FAM92A1P2-202ENST00000504766 877 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 PRDX4P1-201ENST00000507189 574 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HPS3Q969F9 SNORA70.16-201ENST00000516390 95 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 RN7SKP83-201ENST00000516512 178 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 RNU6-677P-201ENST00000516914 101 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 RNA5SP503-201ENST00000517047 117 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 IGKV2-23-201ENST00000518729 323 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 IGKV2D-19-201ENST00000523346 262 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 AP001804.3-201ENST00000525146 880 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
HPS3Q969F9 MIR4775-201ENST00000581168 75 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 MIR3944-201ENST00000581277 108 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AP001029.3-201ENST00000588063 596 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 AL365204.3-201ENST00000612448 685 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 AC048347.1-201ENST00000624621 427 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 FER-210ENST00000628534 558 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 AC119674.1-207ENST00000641355 633 ntBASIC4.1□□□□□ -1.75
HPS3Q969F9 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HPS3Q969F9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HPS3Q969F9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HPS3Q969F9 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HPS3Q969F9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HPS3Q969F9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HPS3Q969F9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC008568.2-201ENST00000623862 2313 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 Y_RNA.255-201ENST00000364581 97 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 DEFB109C-201ENST00000382575 264 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 DEFB109B-201ENST00000382656 264 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RNU6-328P-201ENST00000390887 106 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 HSPE1P26-201ENST00000405341 275 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.09□□□□□ -1.75
HPS3Q969F9 HMGB1P12-201ENST00000438594 598 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RBMX2P4-201ENST00000441256 376 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AL358232.1-201ENST00000448030 501 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RPS29P15-201ENST00000458329 171 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 snoU13.22-201ENST00000459428 104 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AL133162.1-201ENST00000463228 453 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 GMFBP1-201ENST00000467831 427 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RPS4XP13-201ENST00000483219 789 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.09□□□□□ -1.75
HPS3Q969F9 RNU6-927P-201ENST00000516199 100 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RN7SKP60-201ENST00000516985 239 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 RN7SKP289-201ENST00000517244 295 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.09□□□□□ -1.75
HPS3Q969F9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AP005205.1-201ENST00000563503 508 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC024619.4-201ENST00000580924 316 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC067852.3-201ENST00000589177 561 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.09□□□□□ -1.75
HPS3Q969F9 DPPA3P3-201ENST00000603842 430 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC106900.2-201ENST00000604994 317 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 AC005344.1-201ENST00000613391 459 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AL391261.4-201ENST00000616012 481 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 YWHAEP7-203ENST00000622054 312 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.09□□□□□ -1.75
HPS3Q969F9 API5P2-201ENST00000397055 1498 ntBASIC4.09□□□□□ -1.75
HPS3Q969F9 AC006020.1-201ENST00000420179 1854 ntBASIC4.09□□□□□ -1.76
HPS3Q969F9 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HPS3Q969F9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HPS3Q969F9 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.08□□□□□ -1.76
HPS3Q969F9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HPS3Q969F9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HPS3Q969F9 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HPS3Q969F9 RNU6-61P-201ENST00000365528 109 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
HPS3Q969F9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HPS3Q969F9 RNU6-817P-201ENST00000391083 104 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 PTMAP5-201ENST00000393073 333 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 RNA5SP44-201ENST00000410446 133 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 NDUFB4P7-201ENST00000423198 363 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.08□□□□□ -1.76
HPS3Q969F9 CALM2P2-201ENST00000428512 440 ntBASIC4.08□□□□□ -1.76
HPS3Q969F9 MTCO2P3-201ENST00000442543 421 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms