Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.45□□□□□ -1.7
RNF4P78317 SCARNA22-201ENST00000503991 125 ntBASIC4.45□□□□□ -1.7
RNF4P78317 MLLT10P2-201ENST00000506434 249 ntBASIC4.45□□□□□ -1.7
RNF4P78317 RNU6-143P-201ENST00000516942 93 ntBASIC4.45□□□□□ -1.7
RNF4P78317 SNORA31.20-201ENST00000517111 133 ntBASIC4.45□□□□□ -1.7
RNF4P78317 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 AC131281.1-201ENST00000522984 164 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AP004371.1-201ENST00000525240 214 ntBASIC4.45□□□□□ -1.7
RNF4P78317 CBX3P8-201ENST00000532412 525 ntBASIC4.45□□□□□ -1.7
RNF4P78317 TRAV32-201ENST00000553993 340 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AL157871.3-201ENST00000557231 293 ntBASIC4.45□□□□□ -1.7
RNF4P78317 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.45□□□□□ -1.7
RNF4P78317 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
RNF4P78317 MIR3976-201ENST00000606807 139 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AL442067.1-201ENST00000613261 223 ntBASIC4.45□□□□□ -1.7
RNF4P78317 U2.1-201ENST00000618978 145 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.45□□□□□ -1.7
RNF4P78317 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.45□□□□□ -1.7
RNF4P78317 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
RNF4P78317 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.45□□□□□ -1.7
RNF4P78317 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
RNF4P78317 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
RNF4P78317 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.44□□□□□ -1.7
RNF4P78317 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 RNU1-94P-201ENST00000362627 173 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RNU6-1167P-201ENST00000363227 94 ntBASIC4.44□□□□□ -1.7
RNF4P78317 Y_RNA.210-201ENST00000364161 110 ntBASIC4.44□□□□□ -1.7
RNF4P78317 MIR585-201ENST00000384887 94 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AL080315.1-201ENST00000406055 466 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RPL23AP48-201ENST00000406913 488 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RNU6-174P-201ENST00000410406 106 ntBASIC4.44□□□□□ -1.7
RNF4P78317 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.44□□□□□ -1.7
RNF4P78317 BX510359.2-201ENST00000417920 305 ntBASIC4.44□□□□□ -1.7
RNF4P78317 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.44□□□□□ -1.7
RNF4P78317 AC005154.2-201ENST00000438110 379 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.44□□□□□ -1.7
RNF4P78317 AC011005.2-201ENST00000487324 359 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RPL17P19-201ENST00000489069 552 ntBASIC4.44□□□□□ -1.7
RNF4P78317 IGLV2-34-201ENST00000490007 283 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RNU1-6P-201ENST00000516290 144 ntBASIC4.44□□□□□ -1.7
RNF4P78317 IGKV1-32-201ENST00000519290 311 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.44□□□□□ -1.7
RNF4P78317 AC093249.4-201ENST00000564755 259 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RN7SL176P-201ENST00000580352 264 ntBASIC4.44□□□□□ -1.7
RNF4P78317 MIR4270-201ENST00000581799 70 ntBASIC4.44□□□□□ -1.7
RNF4P78317 RN7SL435P-201ENST00000584418 282 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AL355297.3-201ENST00000604082 446 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AL161798.1-201ENST00000604630 131 ntBASIC4.44□□□□□ -1.7
RNF4P78317 AC107294.1-201ENST00000609524 467 ntBASIC4.44□□□□□ -1.7
RNF4P78317 MIR4272-201ENST00000635924 64 ntBASIC4.44□□□□□ -1.7
RNF4P78317 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
RNF4P78317 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
RNF4P78317 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.44□□□□□ -1.7
RNF4P78317 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
RNF4P78317 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
RNF4P78317 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
RNF4P78317 AL592437.2-201ENST00000421655 2434 ntBASIC4.43□□□□□ -1.7
RNF4P78317 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
RNF4P78317 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.43□□□□□ -1.7
RNF4P78317 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
RNF4P78317 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
RNF4P78317 AL645608.4-201ENST00000423619 154 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.43□□□□□ -1.7
RNF4P78317 BTF3P6-201ENST00000448054 499 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AC087588.1-201ENST00000462203 316 ntBASIC4.43□□□□□ -1.7
RNF4P78317 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.43□□□□□ -1.7
RNF4P78317 HMGN2P13-201ENST00000476476 274 ntBASIC4.43□□□□□ -1.7
RNF4P78317 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.43□□□□□ -1.7
RNF4P78317 AC091868.1-201ENST00000508746 304 ntBASIC4.43□□□□□ -1.7
RNF4P78317 ACA59.1-201ENST00000515966 143 ntBASIC4.43□□□□□ -1.7
RNF4P78317 MIR892C-201ENST00000516410 77 ntBASIC4.43□□□□□ -1.7
RNF4P78317 IGKV2D-23-201ENST00000518179 286 ntBASIC4.43□□□□□ -1.7
RNF4P78317 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.43□□□□□ -1.7
RNF4P78317 TRAV37-201ENST00000553906 342 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.43□□□□□ -1.7
RNF4P78317 HNRNPCP4-201ENST00000571636 900 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.43□□□□□ -1.7
RNF4P78317 MIR4273-201ENST00000582824 84 ntBASIC4.43□□□□□ -1.7
RNF4P78317 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
RNF4P78317 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.43□□□□□ -1.7
RNF4P78317 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.43□□□□□ -1.7
RNF4P78317 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AL591516.1-201ENST00000611326 274 ntBASIC4.43□□□□□ -1.7
RNF4P78317 MIR6853-201ENST00000619642 74 ntBASIC4.43□□□□□ -1.7
RNF4P78317 AC138627.2-201ENST00000624202 601 ntBASIC4.43□□□□□ -1.7
RNF4P78317 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
RNF4P78317 NCAPGP1-201ENST00000505112 1814 ntBASIC4.43□□□□□ -1.7
RNF4P78317 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
RNF4P78317 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
RNF4P78317 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
RNF4P78317 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
RNF4P78317 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms