Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXA1P49639 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXA1P49639 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA1P49639 MED28P6-201ENST00000558776 231 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC055876.1-202ENST00000567053 138 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 HMGB1P6-201ENST00000569046 646 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA1P49639 MIR548S-201ENST00000581352 82 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 RMST_3.1-201ENST00000611651 109 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AL020991.1-201ENST00000612314 373 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 MIR6716-201ENST00000613413 80 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC010133.1-201ENST00000615809 842 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AL360181.4-201ENST00000621752 134 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC010338.1-201ENST00000621823 717 ntBASIC3.06□□□□□ -1.92
HOXA1P49639 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
HOXA1P49639 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXA1P49639 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA1P49639 OR4G2P-202ENST00000641004 1759 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 AP001350.1-201ENST00000601906 1524 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA1P49639 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA1P49639 RNU6-223P-201ENST00000362830 107 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 RNU6-1284P-201ENST00000363701 100 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 SNORA7.2-201ENST00000364446 145 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
HOXA1P49639 MIR199A2-201ENST00000385289 110 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 MIR887-201ENST00000401258 79 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AL445189.1-201ENST00000405722 338 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 OR9R1P-201ENST00000412200 877 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 BX323014.1-201ENST00000412876 237 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 AC092809.3-201ENST00000415453 231 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 DUTP6-201ENST00000425573 462 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC008850.1-201ENST00000427546 362 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC093151.1-201ENST00000427711 313 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA1P49639 RPS23P7-201ENST00000466210 444 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC126389.1-201ENST00000477436 290 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA1P49639 PRDX4P1-201ENST00000507189 574 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 GMPSP1-201ENST00000514075 579 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA1P49639 IGKV2D-19-201ENST00000523346 262 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AP006587.4-201ENST00000526053 529 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA1P49639 AL512310.1-201ENST00000548639 172 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA1P49639 SNORD84-203ENST00000584275 78 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC068790.4-201ENST00000602474 263 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AL162413.1-201ENST00000603198 110 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 SDR42E1P2-201ENST00000614861 481 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC068831.8-201ENST00000620171 435 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC024940.5-201ENST00000622889 474 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXA1P49639 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA1P49639 AC024614.3-201ENST00000637860 256 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA1P49639 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXA1P49639 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXA1P49639 AC006020.1-201ENST00000420179 1854 ntBASIC3.05□□□□□ -1.92
HOXA1P49639 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXA1P49639 CASC19-280ENST00000642102 1351 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RNU5A-1-201ENST00000362698 116 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RNU6-451P-201ENST00000362921 107 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RNA5SP130-201ENST00000364431 114 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 SNORA62-201ENST00000365493 153 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RNU4-48P-201ENST00000365559 182 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RNU6-877P-201ENST00000383868 107 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXA1P49639 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA1P49639 RNA5SP344-201ENST00000411081 104 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC016397.1-201ENST00000412463 242 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA1P49639 OR51A5P-201ENST00000415429 942 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA1P49639 TBCAP1-201ENST00000436520 327 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 HIGD1AP11-201ENST00000438361 280 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AL121871.1-201ENST00000443413 436 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RPL23AP31-201ENST00000456160 467 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA1P49639 snoU13.4-201ENST00000458916 104 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RN7SL459P-201ENST00000481078 302 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RPS29P25-201ENST00000481709 171 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 VN1R104P-201ENST00000505115 1009 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 HMGB3P15-201ENST00000507326 574 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 RBBP4P6-201ENST00000508098 202 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC117522.1-201ENST00000509821 380 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC108078.2-201ENST00000510750 236 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA1P49639 SNORA31.9-201ENST00000516429 84 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 SNORA64.4-201ENST00000516632 81 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms