Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 NRBF2P1-201ENST00000587407 859 ntBASIC2.92□□□□□ -1.94
SOX3P41225 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AC087683.1-201ENST00000591187 441 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC008277.2-201ENST00000605196 797 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AP002826.1-201ENST00000608835 315 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC104073.3-201ENST00000610942 955 ntBASIC2.92□□□□□ -1.94
SOX3P41225 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.92□□□□□ -1.94
SOX3P41225 AL591516.1-201ENST00000611326 274 ntBASIC2.92□□□□□ -1.94
SOX3P41225 PLCE1P1-201ENST00000622094 305 ntBASIC2.92□□□□□ -1.94
SOX3P41225 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SOX3P41225 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SOX3P41225 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SOX3P41225 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.92□□□□□ -1.94
SOX3P41225 AF117829.1-206ENST00000621883 3802 ntBASIC2.92□□□□□ -1.94
SOX3P41225 SDAD1P2-201ENST00000441308 2028 ntBASIC2.92□□□□□ -1.94
SOX3P41225 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 RNU5E-1-201ENST00000362477 120 ntBASIC2.91□□□□□ -1.94
SOX3P41225 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
SOX3P41225 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 NDUFB4P5-201ENST00000415445 361 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 SDCBPP3-201ENST00000419629 891 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.91□□□□□ -1.94
SOX3P41225 RPL27AP8-201ENST00000424277 446 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 OR2AS1P-201ENST00000427827 319 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL589823.1-201ENST00000429577 183 ntBASIC2.91□□□□□ -1.94
SOX3P41225 USP9YP14-201ENST00000430663 563 ntBASIC2.91□□□□□ -1.94
SOX3P41225 RPL23AP69-201ENST00000431134 458 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AC073614.1-201ENST00000438690 650 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL662791.1-201ENST00000441992 928 ntBASIC2.91□□□□□ -1.94
SOX3P41225 ELOCP23-201ENST00000452014 332 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 TPT1P7-201ENST00000458300 517 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC008481.1-201ENST00000463278 396 ntBASIC2.91□□□□□ -1.94
SOX3P41225 MTCO2P29-201ENST00000465212 189 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 AL359273.1-201ENST00000510918 627 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC114797.1-201ENST00000514003 728 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 SNORA70.16-201ENST00000516390 95 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 IGHV3-76-201ENST00000522465 295 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AL391156.1-201ENST00000554965 554 ntBASIC2.91□□□□□ -1.94
SOX3P41225 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 AGGF1P4-201ENST00000568249 801 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC012213.3-201ENST00000577199 777 ntBASIC2.91□□□□□ -1.94
SOX3P41225 UBL5P2-201ENST00000583788 219 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AF038458.1-201ENST00000588406 262 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.91□□□□□ -1.94
SOX3P41225 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 AC103710.2-201ENST00000609912 942 ntBASIC2.91□□□□□ -1.94
SOX3P41225 Z99129.1-201ENST00000612510 255 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL589743.7-201ENST00000612637 233 ntBASIC2.91□□□□□ -1.94
SOX3P41225 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 AC110994.2-201ENST00000635481 492 ntBASIC2.91□□□□□ -1.94
SOX3P41225 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 MTND5P19-201ENST00000424872 1794 ntBASIC2.91□□□□□ -1.94
SOX3P41225 AL353743.1-202ENST00000431724 1695 ntBASIC2.91□□□□□ -1.94
SOX3P41225 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
SOX3P41225 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
SOX3P41225 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.9□□□□□ -1.95
SOX3P41225 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SOX3P41225 RNU5A-1-201ENST00000362698 116 ntBASIC2.9□□□□□ -1.95
SOX3P41225 SNORA7.4-201ENST00000384249 137 ntBASIC2.9□□□□□ -1.95
SOX3P41225 MIR128-1-201ENST00000384921 82 ntBASIC2.9□□□□□ -1.95
SOX3P41225 MIR591-201ENST00000385290 95 ntBASIC2.9□□□□□ -1.95
SOX3P41225 SNORA48.2-201ENST00000390926 124 ntBASIC2.9□□□□□ -1.95
SOX3P41225 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.9□□□□□ -1.95
SOX3P41225 RNU2-16P-201ENST00000410712 136 ntBASIC2.9□□□□□ -1.95
SOX3P41225 C1DP2-201ENST00000418167 426 ntBASIC2.9□□□□□ -1.95
SOX3P41225 RPS15AP12-201ENST00000419498 388 ntBASIC2.9□□□□□ -1.95
SOX3P41225 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC008850.1-201ENST00000427546 362 ntBASIC2.9□□□□□ -1.95
SOX3P41225 ISCA1P6-201ENST00000427740 390 ntBASIC2.9□□□□□ -1.95
SOX3P41225 USP12PX-201ENST00000432383 1057 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC119618.1-201ENST00000434191 222 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC104850.1-201ENST00000435940 476 ntBASIC2.9□□□□□ -1.95
SOX3P41225 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.9□□□□□ -1.95
SOX3P41225 KLF3P2-201ENST00000465138 268 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AC010631.1-201ENST00000474150 156 ntBASIC2.9□□□□□ -1.95
SOX3P41225 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.9□□□□□ -1.95
SOX3P41225 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SOX3P41225 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms