Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC004067.1-201ENST00000608733 700 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 AC103710.1-201ENST00000610003 901 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.84□□□□□ -2.11
CPSF4O95639 AC107075.1-201ENST00000613695 314 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 AC090132.2-201ENST00000615881 347 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 MIR6130-201ENST00000619419 109 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 MIR219B-201ENST00000637023 88 ntBASIC1.84□□□□□ -2.11
CPSF4O95639 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
CPSF4O95639 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CPSF4O95639 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CPSF4O95639 MTCO1P9-201ENST00000505577 1534 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 MIR449A-201ENST00000362113 91 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 Y_RNA.192-201ENST00000363977 102 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 RNU6-621P-201ENST00000364752 109 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 Y_RNA.311-201ENST00000365068 96 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 SNORD116.1-201ENST00000365628 92 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 MIR1284-201ENST00000408337 120 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AL135786.1-201ENST00000415892 214 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 PPP1R11P2-201ENST00000423543 382 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC234781.2-201ENST00000426370 994 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AC096638.1-201ENST00000444678 216 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.83□□□□□ -2.12
CPSF4O95639 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 MTND2P39-201ENST00000457230 764 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.83□□□□□ -2.12
CPSF4O95639 SNORD121B-201ENST00000458838 81 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 snoU109.3-201ENST00000459477 145 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC005410.1-202ENST00000460347 485 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 MTND1P16-201ENST00000465177 898 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 SETP11-201ENST00000473027 690 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AL049874.1-201ENST00000489560 388 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC079804.2-201ENST00000490376 200 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 RPL30P5-201ENST00000494923 336 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC021146.8-201ENST00000507455 733 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC079395.1-201ENST00000510981 262 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.83□□□□□ -2.12
CPSF4O95639 AC025755.1-201ENST00000521306 278 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AL512310.1-201ENST00000548639 172 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AP001269.3-201ENST00000588718 329 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF4O95639 AC013553.2-201ENST00000604244 589 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC024560.3-201ENST00000608482 349 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC244517.12-201ENST00000623581 663 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AC116618.1-201ENST00000634617 774 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 AL445984.1-201ENST00000637834 659 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CPSF4O95639 ZNF519P1-201ENST00000449011 1626 ntBASIC1.83□□□□□ -2.12
CPSF4O95639 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.83□□□□□ -2.12
CPSF4O95639 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CPSF4O95639 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
CPSF4O95639 RNU5E-8P-201ENST00000363502 116 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 MIR627-201ENST00000384979 97 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
CPSF4O95639 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 MIR1290-201ENST00000408735 78 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.82□□□□□ -2.12
CPSF4O95639 DPH3P2-201ENST00000422618 250 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AC018630.2-202ENST00000422992 927 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AL953862.1-201ENST00000423016 168 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 NDUFB4P7-201ENST00000423198 363 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AL445646.1-201ENST00000431784 216 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.82□□□□□ -2.12
CPSF4O95639 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.82□□□□□ -2.12
CPSF4O95639 TAAR7P-201ENST00000436141 242 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.82□□□□□ -2.12
CPSF4O95639 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.82□□□□□ -2.12
CPSF4O95639 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.82□□□□□ -2.12
CPSF4O95639 AC009296.1-201ENST00000443146 155 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 MTND1P31-201ENST00000449206 961 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CPSF4O95639 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.82□□□□□ -2.12
CPSF4O95639 RPL23AP70-201ENST00000483361 460 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 FAM172BP-201ENST00000487497 1089 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 HMGB1P36-201ENST00000487709 576 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 RN7SL274P-201ENST00000492268 272 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.82□□□□□ -2.12
CPSF4O95639 RPPH1-2P-201ENST00000516688 293 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 RNU1-104P-201ENST00000517280 175 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 MTCO1P47-201ENST00000523889 1271 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.82□□□□□ -2.12
CPSF4O95639 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.82□□□□□ -2.12
CPSF4O95639 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CPSF4O95639 TMF1P1-201ENST00000576058 373 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 MIR5694-201ENST00000581190 76 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AF131215.7-201ENST00000602443 707 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AC091057.3-201ENST00000602684 733 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 AC109809.1-201ENST00000619665 545 ntBASIC1.82□□□□□ -2.12
CPSF4O95639 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.82□□□□□ -2.12
CPSF4O95639 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.82□□□□□ -2.12
CPSF4O95639 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms