Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RPL12P18-201ENST00000437175 325 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 RPL35AP21-201ENST00000437667 333 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 RNU7-120P-201ENST00000459334 63 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC073073.1-201ENST00000493920 463 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 RPL23AP53-201ENST00000521854 457 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 SYF2P1-201ENST00000550658 413 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 EDDM3DP-201ENST00000554692 434 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 MIR3934-201ENST00000579806 107 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC087783.2-201ENST00000605070 562 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC132825.6-201ENST00000638861 357 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 SCARNA15-201ENST00000607520 4325 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC009812.4-201ENST00000569134 1805 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 RLIMP1-201ENST00000339626 1680 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC007685.1-201ENST00000329806 452 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.269-201ENST00000364685 89 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 RNU6-708P-201ENST00000384217 107 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 MIR215-201ENST00000384858 110 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 MTCO3P29-201ENST00000432119 779 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 RPL23AP56-201ENST00000460778 453 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 HSPE1P6-201ENST00000479457 291 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 FAM25E-202ENST00000608562 189 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 CR381572.2-201ENST00000624852 397 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 AC099654.2-201ENST00000433031 1980 ntBASIC5.18□□□□□ -1.58
USP3Q9Y6I4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP3Q9Y6I4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC009643.2-201ENST00000603543 1448 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 SNORA73.1-201ENST00000363107 205 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RNU6-774P-201ENST00000363238 107 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.277-201ENST00000364754 102 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RNU6-356P-201ENST00000384140 107 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RNA5SP87-201ENST00000384155 118 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPL21P75-201ENST00000396599 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPL21P28-201ENST00000401418 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL117339.3-201ENST00000418733 162 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL158156.1-201ENST00000422509 473 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL590556.1-201ENST00000423231 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPS20P1-201ENST00000434853 354 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 OR4C10P-201ENST00000434991 931 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC000111.2-201ENST00000448200 210 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPL21P11-201ENST00000461458 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPL21P39-201ENST00000463605 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC132942.1-201ENST00000486753 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC093591.1-201ENST00000491435 481 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 RPL21P16-201ENST00000495531 483 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL359273.1-201ENST00000510918 627 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC084851.1-201ENST00000529105 249 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 CBX3P4-201ENST00000538909 354 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AP002770.2-201ENST00000543613 532 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 AL353748.2-201ENST00000622148 471 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 U6.92-201ENST00000636464 89 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 HSPA8P1-201ENST00000425843 1833 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP3Q9Y6I4 STX3-208ENST00000641815 3236 ntBASIC5.17□□□□□ -1.58
USP3Q9Y6I4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms