Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC009804.1-201ENST00000400949 179 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AL451062.2-201ENST00000427515 271 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 EIF1P2-201ENST00000428233 350 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 OR4C10P-201ENST00000434991 931 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AL513043.1-201ENST00000439124 535 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RPL26P6-201ENST00000440913 438 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RPL9P9-202ENST00000466501 579 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 APOOP4-201ENST00000513530 597 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 SYF2P1-201ENST00000550658 413 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AL589674.2-201ENST00000604304 337 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AC073657.2-201ENST00000605661 303 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 BX005214.3-202ENST00000619809 325 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.65□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-858P-201ENST00000362436 107 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 RNA5SP183-201ENST00000362452 119 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 Y_RNA.170-201ENST00000363746 110 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 SNORA67-201ENST00000384423 137 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL035079.1-201ENST00000405210 287 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 RN7SKP229-201ENST00000410465 302 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL451074.5-201ENST00000415894 435 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AC104333.2-201ENST00000422630 192 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL445433.1-201ENST00000457507 257 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AC023141.9-201ENST00000458734 412 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 RN7SL184P-201ENST00000488308 297 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL121603.1-201ENST00000553815 142 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 AC069307.1-201ENST00000602820 447 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 Z99571.1-201ENST00000636677 394 ntBASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
HIF3AQ9Y2N7 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 UBE2L2-201ENST00000254302 429 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RNA5SP132-201ENST00000364725 118 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 U3.32-201ENST00000408116 212 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 SNORA11B-201ENST00000408175 129 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AL513331.1-201ENST00000411908 397 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 COX6CP13-201ENST00000428703 226 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AL445305.1-201ENST00000432577 575 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 HSPD1P21-201ENST00000436541 245 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RPL7AP61-201ENST00000443410 636 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RNU7-87P-201ENST00000459343 62 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC087588.1-201ENST00000462203 316 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 SUMO2P6-201ENST00000505273 288 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RNU1-86P-201ENST00000516108 154 ntBASIC4.64□□□□□ -1.67
HIF3AQ9Y2N7 RNU1-107P-201ENST00000516617 154 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms