Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC012360.2-201ENST00000609349 391 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC013562.2-201ENST00000611632 603 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RNU4-35P-201ENST00000362588 141 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RNU1-73P-201ENST00000383971 164 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 MIR7-3-201ENST00000384898 110 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 MIR670-201ENST00000390142 98 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RNU6-817P-201ENST00000391083 104 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RPL26P27-201ENST00000414397 437 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AL356583.2-201ENST00000426536 280 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 ISCA1P1-201ENST00000426679 387 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 HMGB1P9-201ENST00000429856 646 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 UBBP3-201ENST00000445497 241 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 CYCSP35-201ENST00000451978 304 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 FABP5P15-201ENST00000453566 214 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RPS27P29-201ENST00000463110 252 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC113155.1-201ENST00000511141 769 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 APOOP4-201ENST00000513530 597 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RNU1-103P-201ENST00000516502 125 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 H3F3AP1-201ENST00000559984 334 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC145350.1-201ENST00000567426 208 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 ROCK1P1-201ENST00000573767 549 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC015917.1-201ENST00000579654 510 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 MIR3922-201ENST00000585192 84 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AL355598.1-201ENST00000604169 202 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC104763.2-201ENST00000604179 382 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AL031775.1-201ENST00000607014 887 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 DUSP12P1-201ENST00000612874 516 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC025594.3-201ENST00000613068 790 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AL603755.1-201ENST00000619504 163 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC009878.1-201ENST00000621819 340 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC007494.3-201ENST00000624660 743 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 AC026241.1-201ENST00000517873 2142 ntBASIC2.69□□□□□ -1.98
FOXA2Q9Y261 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.69□□□□□ -1.98
FOXA2Q9Y261 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC110491.1-201ENST00000562191 2010 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 RNA5SP197-201ENST00000363357 119 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 RNU6-511P-201ENST00000363496 107 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 MIR23B-201ENST00000384832 97 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 SNORD17-201ENST00000390930 237 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL122016.1-201ENST00000403365 367 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 BPY2DP-201ENST00000422208 265 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL451062.2-201ENST00000427515 271 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC137499.1-201ENST00000427602 88 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 SETP8-201ENST00000435341 628 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 CST9LP2-201ENST00000437612 320 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC128713.1-201ENST00000471495 306 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 RPS3AP43-201ENST00000479743 781 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 MTND1P3-201ENST00000484956 952 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 RPS27AP10-201ENST00000496103 208 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 HSPD1P15-201ENST00000505573 1122 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 RNU6-1092P-201ENST00000516955 87 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA2Q9Y261 BNIP3P9-201ENST00000603714 553 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC112191.3-201ENST00000604371 277 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC007363.1-201ENST00000604736 620 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC012468.1-201ENST00000604888 430 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC019159.1-201ENST00000605094 187 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AC103710.2-201ENST00000609912 942 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL355365.1-201ENST00000616480 294 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 MIR6075-201ENST00000620782 95 ntBASIC2.68□□□□□ -1.98
FOXA2Q9Y261 AL356321.1-201ENST00000621360 228 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms