Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 EIF4A1P3-201ENST00000411521 244 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AP000907.1-201ENST00000428428 510 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 RPS6P12-201ENST00000432491 726 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 PTMAP3-201ENST00000447474 330 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 RPL12P39-201ENST00000455456 496 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC006026.2-201ENST00000457376 180 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 GLUD1P3-202ENST00000508551 200 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC010265.1-201ENST00000513509 211 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC037487.3-201ENST00000606668 112 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AP000346.3-201ENST00000622821 210 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC091905.4-201ENST00000623432 202 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 AC093671.1-201ENST00000624981 2929 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
LIMD1Q9UGP4 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 RNU6-1301P-201ENST00000362724 104 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 HSPA8P15-201ENST00000401676 786 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 RNU2-68P-201ENST00000410878 191 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC098614.2-201ENST00000426040 255 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC007919.1-201ENST00000429380 217 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 RN7SL481P-201ENST00000477764 299 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 MED28P6-201ENST00000558776 231 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC011487.3-201ENST00000593607 453 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC090617.7-201ENST00000623952 126 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 SCARNA4-201ENST00000629045 128 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC132825.6-201ENST00000638861 357 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 Z95114.1-201ENST00000624264 14574 ntBASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC5.6□□□□□ -1.51
LIMD1Q9UGP4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AL731532.2-201ENST00000623542 1953 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RNU6-335P-201ENST00000364563 113 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RNU6-937P-201ENST00000384325 106 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 MIR192-201ENST00000384915 110 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RNA5SP91-201ENST00000390902 119 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 SNORA11-201ENST00000408789 128 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RNA5SP487-201ENST00000410186 122 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AL358453.1-201ENST00000422522 250 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 CRIP1P1-201ENST00000427567 185 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 TOMM22P6-201ENST00000465035 409 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RPS26P21-201ENST00000475397 348 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 RN7SL459P-201ENST00000481078 302 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 IGLV2-34-201ENST00000490007 283 ntBASIC5.59□□□□□ -1.51
LIMD1Q9UGP4 AC008897.1-201ENST00000494006 347 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms