Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RN7SKP83-201ENST00000516512 178 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 RANP9-201ENST00000519957 271 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.21□□□□□ -1.74
NUP88Q99567 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.21□□□□□ -1.74
NUP88Q99567 AK6P1-201ENST00000540219 478 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.21□□□□□ -1.74
NUP88Q99567 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.21□□□□□ -1.74
NUP88Q99567 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.21□□□□□ -1.74
NUP88Q99567 AC007621.1-201ENST00000604544 437 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.21□□□□□ -1.74
NUP88Q99567 AC007656.2-201ENST00000624902 4547 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
NUP88Q99567 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
NUP88Q99567 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
NUP88Q99567 RNU6-960P-201ENST00000364056 120 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 RNU4-48P-201ENST00000365559 182 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 Y_RNA.573-201ENST00000384763 105 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 MIR3074-201ENST00000384885 81 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 MIR34B-201ENST00000385076 84 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 RPS4XP8-201ENST00000402039 771 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 MTND1P23-201ENST00000416931 372 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 BTF3L4P3-201ENST00000418879 476 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AL590383.1-201ENST00000428602 75 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AL596276.1-201ENST00000434465 418 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.2□□□□□ -1.74
NUP88Q99567 AC020550.1-201ENST00000447385 163 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 RPS29P15-201ENST00000458329 171 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 SNORD105B-201ENST00000458770 79 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC008155.2-201ENST00000464337 397 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 RPL31P60-201ENST00000478450 367 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC025518.1-201ENST00000479856 347 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 RPS4XP13-201ENST00000483219 789 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 RNU6-1281P-201ENST00000516223 105 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.2□□□□□ -1.74
NUP88Q99567 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.2□□□□□ -1.74
NUP88Q99567 AL512310.1-201ENST00000548639 172 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC007424.1-203ENST00000554613 687 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC034105.3-201ENST00000565294 442 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 AC007687.1-201ENST00000602704 304 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC025946.2-201ENST00000603398 234 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 AC096577.2-201ENST00000611455 153 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 U4.6-201ENST00000621618 127 ntBASIC4.2□□□□□ -1.74
NUP88Q99567 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
NUP88Q99567 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
NUP88Q99567 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.2□□□□□ -1.74
NUP88Q99567 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.2□□□□□ -1.74
NUP88Q99567 AP001486.2-201ENST00000561652 5113 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 Y_RNA.248-201ENST00000364501 109 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 RNU6-946P-201ENST00000383878 107 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 RNU6-483P-201ENST00000384088 108 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 AC114491.1-201ENST00000416095 246 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AL451054.2-201ENST00000420896 202 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 RPL21P109-201ENST00000422213 475 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 MTCO1P20-201ENST00000425366 358 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.19□□□□□ -1.74
NUP88Q99567 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 ATP5JP1-201ENST00000431631 322 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.19□□□□□ -1.74
NUP88Q99567 AC078785.3-201ENST00000476607 425 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC108078.2-201ENST00000510750 236 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 SNORA70.16-201ENST00000516390 95 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 RNU6-1256P-201ENST00000516539 103 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 RN7SKP209-201ENST00000516888 304 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC109635.3-201ENST00000529536 185 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC103843.2-201ENST00000530523 682 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.19□□□□□ -1.74
NUP88Q99567 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.19□□□□□ -1.74
NUP88Q99567 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.19□□□□□ -1.74
NUP88Q99567 MIR4801-201ENST00000582704 82 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AP001330.5-201ENST00000607176 411 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC093788.1-201ENST00000609356 927 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 AC005609.4-201ENST00000625071 447 ntBASIC4.19□□□□□ -1.74
NUP88Q99567 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
NUP88Q99567 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
NUP88Q99567 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NUP88Q99567 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NUP88Q99567 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.18□□□□□ -1.74
NUP88Q99567 SMIM11P1-201ENST00000369586 178 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 MIR493-201ENST00000385254 89 ntBASIC4.18□□□□□ -1.74
NUP88Q99567 MIR454-201ENST00000390180 115 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms