Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
VPS13AQ96RL7 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
VPS13AQ96RL7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.84□□□□□ -2.27
VPS13AQ96RL7 AL357134.1-201ENST00000445848 426 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 AL035407.2-201ENST00000454090 378 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 AC067942.3-201ENST00000512025 362 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 AC008676.3-201ENST00000521237 435 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 AC146944.4-201ENST00000602697 718 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 MTND5P11-201ENST00000511037 1812 ntBASIC0.84□□□□□ -2.27
VPS13AQ96RL7 RPL21P90-201ENST00000415692 466 ntBASIC0.84□□□□□ -2.28
VPS13AQ96RL7 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 AC024595.1-201ENST00000623088 387 ntBASIC0.84□□□□□ -2.28
VPS13AQ96RL7 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.84□□□□□ -2.28
VPS13AQ96RL7 AL161722.3-201ENST00000605789 2983 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AL139397.2-201ENST00000404529 772 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AC113368.1-201ENST00000603736 382 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 SNORD14B-201ENST00000364533 90 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 RPS20P10-201ENST00000451209 253 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC0.83□□□□□ -2.28
VPS13AQ96RL7 OR4G3P-201ENST00000633500 913 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 AC073544.1-201ENST00000600110 1595 ntBASIC0.83□□□□□ -2.28
VPS13AQ96RL7 RNU1-62P-201ENST00000362599 164 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 NACAP2-201ENST00000318548 624 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 MIR1265-201ENST00000408444 86 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 RNU2-37P-201ENST00000410695 177 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AC023050.2-201ENST00000544968 387 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AC087465.1-201ENST00000560574 245 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AL390862.1-201ENST00000635467 1469 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 AC002550.2-201ENST00000621246 394 ntBASIC0.82□□□□□ -2.28
VPS13AQ96RL7 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.82□□□□□ -2.28
VPS13AQ96RL7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 RPS29P28-201ENST00000446439 141 ntBASIC0.81□□□□□ -2.28
VPS13AQ96RL7 AL500527.1-201ENST00000448532 255 ntBASIC0.81□□□□□ -2.28
VPS13AQ96RL7 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 AL391261.3-201ENST00000557194 520 ntBASIC0.81□□□□□ -2.28
VPS13AQ96RL7 HMGB1P24-202ENST00000615653 685 ntBASIC0.81□□□□□ -2.28
VPS13AQ96RL7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC0.81□□□□□ -2.28
VPS13AQ96RL7 RNU6-418P-201ENST00000384035 107 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AC012497.1-201ENST00000429392 575 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 SNORD97-201ENST00000459187 142 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 MIR4636-201ENST00000582271 80 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 UBE2L4-201ENST00000587688 464 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 ELL2P3-201ENST00000457883 1602 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 RNA5SP499-201ENST00000363982 119 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.8□□□□□ -2.28
VPS13AQ96RL7 AC125611.2-201ENST00000551907 647 ntBASIC0.8□□□□□ -2.28
VPS13AQ96RL7 MIR329-2-201ENST00000385029 84 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 RNA5SP492-201ENST00000411330 114 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 AL022238.1-201ENST00000442557 355 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 AC005908.1-201ENST00000468701 347 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
VPS13AQ96RL7 AC005156.1-201ENST00000613371 573 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
VPS13AQ96RL7 Y_RNA.324-201ENST00000365165 102 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 SNORA2A-201ENST00000383885 135 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 AL591704.2-201ENST00000421658 181 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS13AQ96RL7 MTCO1P43-201ENST00000431831 488 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.79□□□□□ -2.28
VPS13AQ96RL7 SNORA48.11-201ENST00000517015 89 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 RNU1-104P-201ENST00000517280 175 ntBASIC0.79□□□□□ -2.28
VPS13AQ96RL7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.78□□□□□ -2.28
VPS13AQ96RL7 HSFY3P-201ENST00000444242 1191 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 ARPC3P2-201ENST00000457786 533 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC008379.1-201ENST00000463655 464 ntBASIC0.78□□□□□ -2.28
VPS13AQ96RL7 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms