Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC068057.2-201ENST00000624047 895 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC091903.1-201ENST00000624322 454 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC120349.3-201ENST00000624377 529 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC007494.3-201ENST00000624660 743 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC091564.4-201ENST00000533934 2194 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RNU1-105P-201ENST00000363470 161 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 U3.6-201ENST00000363622 211 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RNY4P16-201ENST00000364768 94 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RPL32P35-201ENST00000415214 394 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RPS15AP12-201ENST00000419498 388 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RPL7P46-201ENST00000425129 740 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 DPPA2P1-201ENST00000428060 556 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RPL7P34-201ENST00000433316 712 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RPL27AP5-201ENST00000469428 449 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 SCARNA13-201ENST00000516672 275 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RN7SKP258-201ENST00000517151 304 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 RNA5SP380-201ENST00000517190 98 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC106038.2-201ENST00000520706 568 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC083760.1-201ENST00000589621 670 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AL136363.1-201ENST00000605349 337 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC092354.1-201ENST00000606057 376 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC239868.4-201ENST00000608318 671 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AL391813.2-201ENST00000609113 322 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC006338.1-201ENST00000618453 749 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 FRG1KP-201ENST00000623592 341 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AP003485.2-201ENST00000623636 610 ntBASIC3.27□□□□□ -1.89
PRPF39Q86UA1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PRPF39Q86UA1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 FTLP6-201ENST00000355274 422 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 RNU5E-5P-201ENST00000365379 116 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 MIR767-201ENST00000390228 109 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 RPL21P3-201ENST00000395517 478 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 MRPL42P2-201ENST00000403169 426 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 USP9YP13-201ENST00000417797 480 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 UBE2D3P4-201ENST00000441973 436 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 EPS15P1-201ENST00000448836 336 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 RPL12P25-201ENST00000455592 494 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC146507.2-201ENST00000460608 476 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 MTND3P12-201ENST00000559068 328 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 MIR5697-201ENST00000578045 78 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 U73023.1-201ENST00000603134 700 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC136601.2-201ENST00000604356 474 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC012360.2-201ENST00000609349 391 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 uc_338.12-201ENST00000616344 181 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC091931.1-201ENST00000623488 728 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 AC092104.1-201ENST00000497346 1441 ntBASIC3.26□□□□□ -1.89
PRPF39Q86UA1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.26□□□□□ -1.89
PRPF39Q86UA1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 OR1S2-201ENST00000302592 978 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 RNU6-1167P-201ENST00000363227 94 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AC104651.1-201ENST00000427559 735 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AC010153.1-201ENST00000432862 727 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AC016696.1-201ENST00000446949 318 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 USP9YP12-201ENST00000450481 570 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.25□□□□□ -1.89
PRPF39Q86UA1 RNA5SP341-201ENST00000516261 117 ntBASIC3.25□□□□□ -1.89
PRPF39Q86UA1 AC026407.1-201ENST00000518369 204 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms