Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC116618.1-201ENST00000634617 774 ntBASIC1.33□□□□□ -2.2
FOXA3P55318 MTCO1P23-201ENST00000415223 1526 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 RNU6-252P-201ENST00000363232 107 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 RNU6-741P-201ENST00000383889 107 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 MIR514A1-201ENST00000385133 98 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AC016769.3-201ENST00000396562 315 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
FOXA3P55318 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
FOXA3P55318 IFNA20P-201ENST00000436840 528 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.32□□□□□ -2.2
FOXA3P55318 RPL7P18-201ENST00000478965 734 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 LARP1BP2-201ENST00000486594 519 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AC007182.2-201ENST00000489251 402 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.32□□□□□ -2.2
FOXA3P55318 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.32□□□□□ -2.2
FOXA3P55318 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC1.32□□□□□ -2.2
FOXA3P55318 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA3P55318 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA3P55318 AL160281.1-201ENST00000605307 311 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AC068276.1-201ENST00000605793 379 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AC090617.9-201ENST00000623751 147 ntBASIC1.32□□□□□ -2.2
FOXA3P55318 AC092881.1-201ENST00000638218 2733 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
FOXA3P55318 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
FOXA3P55318 RNA5SP276-201ENST00000362580 94 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC1.31□□□□□ -2.2
FOXA3P55318 MIR218-1-201ENST00000384999 110 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 OR4K6P-201ENST00000416478 897 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AL158823.1-201ENST00000418441 478 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC096920.1-201ENST00000423991 241 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 ZDHHC20P2-201ENST00000424108 429 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RPS3AP44-201ENST00000425466 790 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC093422.3-201ENST00000428506 305 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RPL31P54-201ENST00000429803 370 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA3P55318 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC003989.2-201ENST00000440224 169 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RPL7P12-201ENST00000446719 750 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC005297.2-201ENST00000450430 606 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RPL31P50-201ENST00000471002 296 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC008526.1-201ENST00000509149 338 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA3P55318 LTV1P1-201ENST00000510683 1237 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 RNU6-760P-201ENST00000516078 97 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC022880.1-201ENST00000534017 973 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC105245.1-201ENST00000581934 244 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA3P55318 RPP40P2-201ENST00000603596 712 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA3P55318 AC104763.3-201ENST00000613765 618 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 AC109454.4-201ENST00000623411 649 ntBASIC1.31□□□□□ -2.2
FOXA3P55318 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA3P55318 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.31□□□□□ -2.2
FOXA3P55318 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
FOXA3P55318 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA3P55318 RNU2-47P-201ENST00000410649 186 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 OR51A3P-201ENST00000413596 924 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 EDDM3CP-201ENST00000415977 425 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA3P55318 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA3P55318 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA3P55318 UBE2D3P1-201ENST00000436669 444 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 SNORA31.6-201ENST00000516241 130 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 EIF1AXP2-201ENST00000555940 413 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 SULT1C2P1-202ENST00000562418 459 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA3P55318 AC104581.2-201ENST00000572227 430 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 BPTFP1-201ENST00000579209 492 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 BNIP3P22-201ENST00000593399 556 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 AC068790.3-201ENST00000602988 553 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 AP002791.1-201ENST00000623291 381 ntBASIC1.3□□□□□ -2.2
FOXA3P55318 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.3□□□□□ -2.2
FOXA3P55318 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
FOXA3P55318 MTND5P30-201ENST00000452896 1731 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
FOXA3P55318 RNU6-115P-201ENST00000364310 107 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 SNORA23-201ENST00000365128 182 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
FOXA3P55318 RNU6-76P-201ENST00000384060 104 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RNU6-40P-201ENST00000384254 107 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RNU6-878P-201ENST00000384578 110 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RNU6-997P-201ENST00000384725 107 ntBASIC1.29□□□□□ -2.2
FOXA3P55318 RPL7P27-201ENST00000403775 720 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms