Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC253576.2-201ENST00000618815 580 ntBASIC2.37□□□□□ -2.03
BRCA1P38398 AC027309.3-201ENST00000623419 351 ntBASIC2.37□□□□□ -2.03
BRCA1P38398 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.37□□□□□ -2.03
BRCA1P38398 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.37□□□□□ -2.03
BRCA1P38398 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
BRCA1P38398 AC027514.1-201ENST00000588561 1603 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 SUCLA2P2-201ENST00000417269 1309 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
BRCA1P38398 RNU6-839P-201ENST00000363347 108 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.36□□□□□ -2.03
BRCA1P38398 MIR767-201ENST00000390228 109 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 HMGN2P35-201ENST00000412164 270 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.36□□□□□ -2.03
BRCA1P38398 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.36□□□□□ -2.03
BRCA1P38398 AC104332.2-201ENST00000429959 156 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC109583.1-201ENST00000432156 268 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.36□□□□□ -2.03
BRCA1P38398 AC244505.3-201ENST00000454598 187 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 MTCO1P42-201ENST00000457379 726 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC092757.1-201ENST00000467293 467 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
BRCA1P38398 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.36□□□□□ -2.03
BRCA1P38398 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC2.36□□□□□ -2.03
BRCA1P38398 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.36□□□□□ -2.03
BRCA1P38398 ZNF971P-201ENST00000562068 1249 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 MTND4LP25-201ENST00000570218 163 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 ISCA1P3-201ENST00000577104 373 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.36□□□□□ -2.03
BRCA1P38398 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC2.36□□□□□ -2.03
BRCA1P38398 AP002802.2-201ENST00000605877 235 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC131902.3-201ENST00000611767 581 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 AC006213.4-201ENST00000616184 634 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 ZNF519P1-201ENST00000449011 1626 ntBASIC2.36□□□□□ -2.03
BRCA1P38398 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
BRCA1P38398 Z82209.1-201ENST00000422141 2135 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 RNA5SP354-201ENST00000391247 136 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.35□□□□□ -2.03
BRCA1P38398 MTND4P13-201ENST00000402078 1023 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 RNU2-68P-201ENST00000410878 191 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 RPL7P46-201ENST00000425129 740 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC092427.1-201ENST00000439177 601 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 TRIM60P18-201ENST00000441518 828 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 RAC1P7-201ENST00000445367 377 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC017099.1-201ENST00000448261 1028 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.35□□□□□ -2.03
BRCA1P38398 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.35□□□□□ -2.03
BRCA1P38398 RPL23AP78-201ENST00000599928 470 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 SNRPGP19-201ENST00000603826 189 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AL133507.1-201ENST00000605269 557 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 Y_RNA.783-201ENST00000613546 102 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC010678.1-201ENST00000614118 713 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.35□□□□□ -2.03
BRCA1P38398 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.35□□□□□ -2.03
BRCA1P38398 RNU6-1155P-201ENST00000363554 107 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.35□□□□□ -2.03
BRCA1P38398 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 RPL35AP22-201ENST00000436855 335 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AL096829.2-201ENST00000446582 742 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 SEPT14P24-201ENST00000447236 180 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC117532.1-201ENST00000514638 323 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 RNU6-250P-201ENST00000516958 103 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AC087373.1-201ENST00000524920 491 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
BRCA1P38398 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.35□□□□□ -2.03
BRCA1P38398 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.35□□□□□ -2.03
BRCA1P38398 AP003485.1-201ENST00000625093 753 ntBASIC2.35□□□□□ -2.03
BRCA1P38398 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
BRCA1P38398 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
BRCA1P38398 CD24P4-201ENST00000382840 243 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 RNU6-193P-201ENST00000410977 107 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 AC007435.1-201ENST00000421086 415 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 UBE2D3P2-201ENST00000424409 445 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 MTCYBP45-201ENST00000435243 565 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.34□□□□□ -2.03
BRCA1P38398 BX322784.1-201ENST00000455793 1077 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 AC087190.1-201ENST00000484462 480 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.34□□□□□ -2.03
BRCA1P38398 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.34□□□□□ -2.03
BRCA1P38398 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.34□□□□□ -2.03
BRCA1P38398 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
BRCA1P38398 RPL23AP88-201ENST00000605759 454 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
BRCA1P38398 AC018926.1-201ENST00000616335 435 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 MIR6130-201ENST00000619419 109 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 AC068880.5-201ENST00000624331 290 ntBASIC2.34□□□□□ -2.03
BRCA1P38398 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.34□□□□□ -2.04
BRCA1P38398 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.34□□□□□ -2.04
BRCA1P38398 OR4G11P-202ENST00000642116 1414 ntBASIC2.34□□□□□ -2.04
BRCA1P38398 ZNF271P-202ENST00000465539 1970 ntBASIC2.34□□□□□ -2.04
BRCA1P38398 RNU5D-1-201ENST00000363299 116 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 RPL22P22-201ENST00000395439 379 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms