Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC019097.1-201ENST00000424783 735 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC005300.1-201ENST00000428401 373 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH3P20585 AC104850.1-201ENST00000435940 476 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.21□□□□□ -1.9
MSH3P20585 ARPC3P1-201ENST00000437218 533 ntBASIC3.21□□□□□ -1.9
MSH3P20585 MTND1P1-201ENST00000445453 368 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC079448.1-201ENST00000449377 373 ntBASIC3.21□□□□□ -1.9
MSH3P20585 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 snoU13.4-201ENST00000458916 104 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC093278.1-201ENST00000494700 600 ntBASIC3.21□□□□□ -1.9
MSH3P20585 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH3P20585 AP000857.1-201ENST00000532151 543 ntBASIC3.21□□□□□ -1.9
MSH3P20585 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
MSH3P20585 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 AL391840.1-201ENST00000571144 367 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.21□□□□□ -1.9
MSH3P20585 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.21□□□□□ -1.9
MSH3P20585 AP003465.2-201ENST00000602571 373 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC245014.2-201ENST00000603689 287 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC246785.4-201ENST00000605374 287 ntBASIC3.21□□□□□ -1.9
MSH3P20585 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH3P20585 AC090970.3-201ENST00000612566 866 ntBASIC3.21□□□□□ -1.9
MSH3P20585 MIR6130-201ENST00000619419 109 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC138649.3-201ENST00000622154 254 ntBASIC3.21□□□□□ -1.9
MSH3P20585 AC068880.5-201ENST00000624331 290 ntBASIC3.21□□□□□ -1.9
MSH3P20585 OR5AK4P-201ENST00000635912 903 ntBASIC3.21□□□□□ -1.9
MSH3P20585 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.21□□□□□ -1.9
MSH3P20585 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSH3P20585 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
MSH3P20585 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 AC027514.1-201ENST00000588561 1603 ntBASIC3.2□□□□□ -1.9
MSH3P20585 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 RPL7P26-201ENST00000333817 754 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH3P20585 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 RNA5SP129-201ENST00000410276 118 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AC127391.1-201ENST00000411737 98 ntBASIC3.2□□□□□ -1.9
MSH3P20585 SSXP9-201ENST00000417503 292 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC079780.1-201ENST00000428259 207 ntBASIC3.2□□□□□ -1.9
MSH3P20585 RPL31P35-201ENST00000431058 377 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL358934.1-201ENST00000432346 324 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 MTND1P4-201ENST00000435196 415 ntBASIC3.2□□□□□ -1.9
MSH3P20585 RPL35AP22-201ENST00000436855 335 ntBASIC3.2□□□□□ -1.9
MSH3P20585 USP9YP15-201ENST00000442391 422 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH3P20585 AC234775.1-201ENST00000454247 670 ntBASIC3.2□□□□□ -1.9
MSH3P20585 MTND1P12-201ENST00000455231 147 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL359385.1-201ENST00000456509 365 ntBASIC3.2□□□□□ -1.9
MSH3P20585 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 RNU7-59P-201ENST00000459101 61 ntBASIC3.2□□□□□ -1.9
MSH3P20585 RN7SL807P-201ENST00000470923 297 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.2□□□□□ -1.9
MSH3P20585 AC092185.1-201ENST00000491371 97 ntBASIC3.2□□□□□ -1.9
MSH3P20585 RPL9P6-201ENST00000492764 598 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC135721.1-201ENST00000497954 479 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC108078.1-201ENST00000508073 725 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 DEFB108D-201ENST00000527787 222 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 AL163153.1-201ENST00000554223 283 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AL133153.1-201ENST00000557756 303 ntBASIC3.2□□□□□ -1.9
MSH3P20585 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.2□□□□□ -1.9
MSH3P20585 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.2□□□□□ -1.9
MSH3P20585 AL606834.2-201ENST00000602954 668 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL022154.1-201ENST00000604698 785 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC093838.1-201ENST00000613014 469 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AL133173.2-201ENST00000614270 90 ntBASIC3.2□□□□□ -1.9
MSH3P20585 uc_338.12-201ENST00000616344 181 ntBASIC3.2□□□□□ -1.9
MSH3P20585 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.2□□□□□ -1.9
MSH3P20585 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
MSH3P20585 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSH3P20585 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
MSH3P20585 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
MSH3P20585 DEFB109C-201ENST00000382575 264 ntBASIC3.19□□□□□ -1.9
MSH3P20585 DEFB109B-201ENST00000382656 264 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AL357075.1-201ENST00000404107 726 ntBASIC3.19□□□□□ -1.9
MSH3P20585 GSTA9P-201ENST00000406231 611 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RNA5SP229-201ENST00000410809 99 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.19□□□□□ -1.9
MSH3P20585 RPL32P35-201ENST00000415214 394 ntBASIC3.19□□□□□ -1.9
MSH3P20585 RPS15AP12-201ENST00000419498 388 ntBASIC3.19□□□□□ -1.9
MSH3P20585 C8orf59P1-201ENST00000429930 303 ntBASIC3.19□□□□□ -1.9
MSH3P20585 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.19□□□□□ -1.9
MSH3P20585 HMGN2P20-201ENST00000437531 273 ntBASIC3.19□□□□□ -1.9
MSH3P20585 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 149.5 ms