Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Y_RNA.128-201ENST00000363391 112 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 Y_RNA.144-201ENST00000363521 113 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 SNORA80A-201ENST00000363922 136 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL3A1P02461 Y_RNA.384-201ENST00000383909 102 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 MIR559-201ENST00000385188 96 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 SNORA75.4-201ENST00000391278 119 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 MIR1305-201ENST00000408300 86 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.03□□□□□ -1.76
COL3A1P02461 MTCO2P5-201ENST00000422621 426 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC107083.1-201ENST00000439643 279 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.03□□□□□ -1.76
COL3A1P02461 AC093156.1-201ENST00000440382 670 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 RPL17P49-201ENST00000443728 411 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC097493.1-201ENST00000463958 372 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AL035404.1-201ENST00000497982 568 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.03□□□□□ -1.76
COL3A1P02461 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.03□□□□□ -1.76
COL3A1P02461 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.03□□□□□ -1.76
COL3A1P02461 VWA8P1-201ENST00000510889 176 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 Vault.1-201ENST00000516474 102 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 RNU7-30P-201ENST00000516835 62 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC027309.2-201ENST00000520566 192 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.03□□□□□ -1.76
COL3A1P02461 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.03□□□□□ -1.76
COL3A1P02461 RMST_3.1-201ENST00000611651 109 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 DISC2.1-201ENST00000612827 205 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 AL713922.2-201ENST00000619384 716 ntBASIC4.03□□□□□ -1.76
COL3A1P02461 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
COL3A1P02461 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL3A1P02461 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL3A1P02461 MTND5P3-201ENST00000438536 1800 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.02□□□□□ -1.77
COL3A1P02461 MIR22-201ENST00000362190 85 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 SNORA63C-201ENST00000364578 129 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 Y_RNA.315-201ENST00000365117 102 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 RNU6-1160P-201ENST00000384546 104 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 MIR506-201ENST00000384998 124 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 RNU6-510P-201ENST00000391239 108 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AL139095.1-201ENST00000404326 391 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 DUTP6-201ENST00000425573 462 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AL589872.1-201ENST00000426602 288 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 MTND3P2-201ENST00000438452 342 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 LSM1P1-201ENST00000438629 273 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 MTND6P18-201ENST00000439477 513 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.02□□□□□ -1.77
COL3A1P02461 MTCO1P42-201ENST00000457379 726 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC130509.1-201ENST00000464158 433 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.02□□□□□ -1.77
COL3A1P02461 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.02□□□□□ -1.77
COL3A1P02461 RNU6-277P-201ENST00000516272 106 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 Y_RNA.672-201ENST00000516289 104 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL3A1P02461 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.02□□□□□ -1.77
COL3A1P02461 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.02□□□□□ -1.77
COL3A1P02461 AC008083.2-201ENST00000546707 476 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.02□□□□□ -1.77
COL3A1P02461 HMGN1P30-201ENST00000589286 268 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC025946.2-201ENST00000603398 234 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC090525.3-201ENST00000605601 189 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 MIR98-201ENST00000606724 119 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC040896.1-201ENST00000613819 479 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC007318.2-201ENST00000620999 243 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC090971.5-201ENST00000621102 293 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 TPTEP1-208ENST00000636884 213 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.02□□□□□ -1.77
COL3A1P02461 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL3A1P02461 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL3A1P02461 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL3A1P02461 RLIMP2-201ENST00000427891 1563 ntBASIC4.02□□□□□ -1.77
COL3A1P02461 AL672296.1-201ENST00000427780 2158 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 RNU6-451P-201ENST00000362921 107 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL3A1P02461 SNORD15B-201ENST00000384714 146 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AL138885.1-201ENST00000405921 675 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 TXNP7-201ENST00000406296 293 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AL450338.1-201ENST00000407987 512 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AL136133.1-201ENST00000413694 376 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 MRPL50P2-201ENST00000416821 482 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AL353193.1-201ENST00000421444 268 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.01□□□□□ -1.77
COL3A1P02461 RPL31P35-201ENST00000431058 377 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 SNRPEP7-201ENST00000438350 220 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.01□□□□□ -1.77
COL3A1P02461 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.01□□□□□ -1.77
COL3A1P02461 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.01□□□□□ -1.77
COL3A1P02461 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.01□□□□□ -1.77
COL3A1P02461 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL3A1P02461 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.01□□□□□ -1.77
COL3A1P02461 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.01□□□□□ -1.77
COL3A1P02461 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.01□□□□□ -1.77
COL3A1P02461 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.01□□□□□ -1.77
COL3A1P02461 AC010653.1-201ENST00000571108 881 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 SNORD39.2-201ENST00000579995 76 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 MIR3668-201ENST00000582138 75 ntBASIC4.01□□□□□ -1.77
COL3A1P02461 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.01□□□□□ -1.77
COL3A1P02461 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.01□□□□□ -1.77
COL3A1P02461 RNU6-87P-201ENST00000607561 108 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms