Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SNORD115-46-201ENST00000390982 71 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 SNORA17A-201ENST00000391185 133 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNU2-20P-201ENST00000410425 191 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RN7SKP206-201ENST00000410823 293 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC007738.1-201ENST00000413892 348 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 MTCO3P29-201ENST00000432119 779 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 CYCSP6-201ENST00000434498 302 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RANP8-201ENST00000444720 713 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNU7-120P-201ENST00000459334 63 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC087190.1-201ENST00000484462 480 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC107032.1-201ENST00000485945 480 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC007016.1-201ENST00000512110 244 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-1278P-201ENST00000516130 107 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AP002770.2-201ENST00000543613 532 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 SNORA17.5-201ENST00000630429 132 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC021753.1-201ENST00000635724 168 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC009643.2-201ENST00000603543 1448 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AL450345.1-202ENST00000605741 3881 ntBASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.68□□□□□ -1.66
HIF3AQ9Y2N7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC114947.2-201ENST00000565748 2125 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNA5SP52-201ENST00000362448 134 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.27-201ENST00000362540 103 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 SNORA51.1-201ENST00000363243 140 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.143-201ENST00000363520 106 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.439-201ENST00000384119 94 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 SNORA36C-201ENST00000384289 132 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.541-201ENST00000384640 113 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-1179P-201ENST00000384667 107 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 MRPL35P1-201ENST00000404272 572 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RN7SKP16-201ENST00000410180 299 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNU4-34P-201ENST00000410431 124 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.602-201ENST00000410535 92 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC119751.6-201ENST00000416712 186 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC093655.2-201ENST00000425735 631 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 MTATP6P4-201ENST00000427725 675 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RPS29P10-201ENST00000439197 166 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AL136097.1-201ENST00000456945 913 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-927P-201ENST00000516199 100 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-346P-201ENST00000516288 111 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-861P-201ENST00000516745 106 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC004832.4-201ENST00000608952 331 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AL353748.2-201ENST00000622148 471 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 U6.92-201ENST00000636464 89 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AP000542.2-201ENST00000623199 6179 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AC004817.4-201ENST00000602396 3625 ntBASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HIF3AQ9Y2N7 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 MTND5P9-201ENST00000503854 1755 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RPL9P7-201ENST00000330965 580 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 SNORD81.1-201ENST00000363064 77 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-682P-201ENST00000363843 106 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-595P-201ENST00000363944 107 ntBASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-356P-201ENST00000384140 107 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms