Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 USP9YP12-201ENST00000450481 570 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 MTND1P12-201ENST00000455231 147 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 RPL26P9-201ENST00000457466 433 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 RN7SL432P-201ENST00000484057 298 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 RPS27P26-201ENST00000494583 239 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 RNU2-27P-201ENST00000516185 142 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 RNU2-10P-201ENST00000516375 211 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC107934.1-201ENST00000522215 217 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 SUB1P1-201ENST00000524415 382 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SKA1Q96BD8 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC026333.2-201ENST00000542164 106 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC007458.1-201ENST00000542812 373 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC004805.2-201ENST00000605382 482 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 RNU6-87P-201ENST00000607561 108 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC008498.1-201ENST00000613012 531 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC104010.1-201ENST00000616889 150 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC006338.1-201ENST00000618453 749 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC009878.1-201ENST00000621819 340 ntBASIC3.53□□□□□ -1.84
SKA1Q96BD8 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA1Q96BD8 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
SKA1Q96BD8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
SKA1Q96BD8 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 RNU6-884P-201ENST00000363889 107 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 RNU6-701P-201ENST00000384059 107 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 MIR490-201ENST00000384865 128 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 RPS15AP12-201ENST00000419498 388 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 MTND1P28-201ENST00000435623 950 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 CYCSP32-201ENST00000440548 321 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 UBE2D3P4-201ENST00000441973 436 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 NEFMP1-201ENST00000443423 1006 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 EPS15P1-201ENST00000448836 336 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 SNRPFP4-201ENST00000456366 242 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC010486.2-201ENST00000505572 483 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 SNORA31.3-201ENST00000516029 96 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 MIR3118-1-201ENST00000581787 76 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC005498.1-201ENST00000592125 465 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC008739.2-201ENST00000597006 317 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC006557.5-201ENST00000603126 811 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC098826.3-201ENST00000603823 466 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL161798.1-201ENST00000604630 131 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC006077.1-201ENST00000604746 343 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 AP000860.1-201ENST00000605250 559 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AC091953.2-201ENST00000623979 160 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 FAM35CP-201ENST00000554755 2470 ntBASIC3.52□□□□□ -1.85
SKA1Q96BD8 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.52□□□□□ -1.85
SKA1Q96BD8 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA1Q96BD8 AL137003.2-201ENST00000606924 2538 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 UBE2L2-201ENST00000254302 429 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 FRG1CP-201ENST00000358464 769 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 U3.11-201ENST00000364476 212 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 RNU6-805P-201ENST00000365643 106 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 RNU6-193P-201ENST00000410977 107 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 GPM6BP2-201ENST00000432046 144 ntBASIC3.51□□□□□ -1.85
SKA1Q96BD8 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.51□□□□□ -1.85
SKA1Q96BD8 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.51□□□□□ -1.85
SKA1Q96BD8 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.51□□□□□ -1.85
SKA1Q96BD8 GPM6BP1-201ENST00000446387 144 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms