Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AC025946.2-201ENST00000603398 234 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AL137849.1-201ENST00000604767 169 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AL136964.1-201ENST00000622038 2990 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AC024940.5-201ENST00000622889 474 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AC138649.5-201ENST00000637456 137 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 AL645937.1-201ENST00000641739 1652 ntBASIC4.59□□□□□ -1.67
SMC1BQ8NDV3 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SMC1BQ8NDV3 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNU6-451P-201ENST00000362921 107 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 Y_RNA.160-201ENST00000363677 92 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNU6-996P-201ENST00000365438 107 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNU5E-6P-201ENST00000365574 115 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AL031121.1-201ENST00000406553 254 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 SSXP9-201ENST00000417503 292 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 ZNF863P-201ENST00000426746 417 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RPL36AP6-201ENST00000435770 321 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNU7-182P-201ENST00000459009 62 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AL163973.1-201ENST00000484753 577 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 PCBP2P3-201ENST00000509726 843 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNA5SP401-201ENST00000515920 127 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 RNU2-27P-201ENST00000516185 142 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 IGLV3-26-201ENST00000520756 302 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AF038458.1-201ENST00000588406 262 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 XIAPP1-201ENST00000603162 600 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AC103858.2-201ENST00000621471 543 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 AP005264.7-201ENST00000625003 745 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 EXOC5P1-201ENST00000510543 1969 ntBASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMC1BQ8NDV3 MTND5P17-201ENST00000418405 1603 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 Y_RNA.255-201ENST00000364581 97 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL356776.1-201ENST00000406574 447 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 RNA5SP39-201ENST00000411245 120 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 RNU6-373P-201ENST00000411247 98 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 OR9R1P-201ENST00000412200 877 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 RPL21P111-201ENST00000418453 477 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 SDCBPP3-201ENST00000419629 891 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 MTATP6P16-201ENST00000434543 526 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL121601.2-201ENST00000438019 707 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC233702.1-201ENST00000482905 502 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 SNORD60.2-201ENST00000516883 86 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 RNU6-1092P-201ENST00000516955 87 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.6-201ENST00000603753 252 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.11-201ENST00000604059 253 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC136601.2-201ENST00000604356 474 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC008162.1-201ENST00000604718 254 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.1-201ENST00000604752 252 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.5-201ENST00000605253 252 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.12-201ENST00000605291 253 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.8-201ENST00000605353 252 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 BNIP3P10-201ENST00000605360 577 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AL670379.7-201ENST00000605823 252 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC024614.3-201ENST00000637860 256 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC119674.1-207ENST00000641355 633 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 AC006020.1-201ENST00000420179 1854 ntBASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMC1BQ8NDV3 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 NACAP2-201ENST00000318548 624 ntBASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 RNU6-179P-201ENST00000363350 107 ntBASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 RNU6-1074P-201ENST00000383995 104 ntBASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 RNU6-882P-201ENST00000391025 103 ntBASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.56□□□□□ -1.68
SMC1BQ8NDV3 AC244098.2-201ENST00000422068 99 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms