Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
USP53Q70EK8 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.7
USP53Q70EK8 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 DEFB108F-201ENST00000344638 222 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 U3.15-201ENST00000365398 212 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 RPS4XP7-201ENST00000406274 780 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 RNU6-1304P-201ENST00000411374 106 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 TMSB10P2-201ENST00000416049 131 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 TOMM22P1-201ENST00000418578 312 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 RPS29P17-201ENST00000430795 166 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.4□□□□□ -1.71
USP53Q70EK8 RPS24P6-201ENST00000452670 400 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.4□□□□□ -1.71
USP53Q70EK8 AL445433.1-201ENST00000457507 257 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC087588.1-201ENST00000462203 316 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC092451.1-201ENST00000480211 153 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.4□□□□□ -1.71
USP53Q70EK8 AC093303.1-201ENST00000514549 295 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 RNU6-327P-201ENST00000516270 127 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 RNU6-1045P-201ENST00000516321 107 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.4□□□□□ -1.71
USP53Q70EK8 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.4□□□□□ -1.71
USP53Q70EK8 MIR5690-201ENST00000583739 73 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AC012119.1-201ENST00000603184 222 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AL162730.1-201ENST00000605734 292 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 AC114781.5-201ENST00000615297 108 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 AL158196.1-201ENST00000616786 434 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 AL023881.1-201ENST00000621088 301 ntBASIC4.4□□□□□ -1.71
USP53Q70EK8 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.4□□□□□ -1.71
USP53Q70EK8 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
USP53Q70EK8 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.4□□□□□ -1.71
USP53Q70EK8 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP53Q70EK8 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP53Q70EK8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.39□□□□□ -1.71
USP53Q70EK8 Y_RNA.146-201ENST00000363549 102 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 RNU6-593P-201ENST00000364716 112 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 RNU6-601P-201ENST00000384540 107 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 MIR514A1-201ENST00000385133 98 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 AC011933.1-201ENST00000413334 321 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.39□□□□□ -1.71
USP53Q70EK8 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.39□□□□□ -1.71
USP53Q70EK8 ISCUP1-201ENST00000454451 448 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 snoU13.24-201ENST00000458998 104 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 AC130509.1-201ENST00000464158 433 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.39□□□□□ -1.71
USP53Q70EK8 APOOP4-201ENST00000513530 597 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 Y_RNA.711-201ENST00000516993 102 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.39□□□□□ -1.71
USP53Q70EK8 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.39□□□□□ -1.71
USP53Q70EK8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC006270.2-201ENST00000578523 652 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 MAPK10-286ENST00000641208 8747 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 MTCO1P12-201ENST00000414273 1543 ntBASIC4.39□□□□□ -1.71
USP53Q70EK8 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP53Q70EK8 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
USP53Q70EK8 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.39□□□□□ -1.71
USP53Q70EK8 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP53Q70EK8 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.38□□□□□ -1.71
USP53Q70EK8 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
USP53Q70EK8 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.38□□□□□ -1.71
USP53Q70EK8 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.38□□□□□ -1.71
USP53Q70EK8 AC125257.1-201ENST00000560400 2930 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 Y_RNA.197-201ENST00000364004 102 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 RNU6-738P-201ENST00000384531 106 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 LAP3P1-201ENST00000403648 294 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 EI24P1-201ENST00000416584 867 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.38□□□□□ -1.71
USP53Q70EK8 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.38□□□□□ -1.71
USP53Q70EK8 HMGN2P21-201ENST00000447764 270 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 HMGB3P22-202ENST00000451823 572 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 ELOCP24-201ENST00000456370 334 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 Y_RNA.653-201ENST00000459091 95 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 SNORA84-201ENST00000459229 133 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AC108751.2-201ENST00000469993 231 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 RPL31P60-201ENST00000478450 367 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms