Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 ZNF863P-201ENST00000426746 417 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 MRPS31P2-201ENST00000451581 518 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 MTND1P9-201ENST00000453775 944 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 RPS29P25-201ENST00000481709 171 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AC093278.1-201ENST00000494700 600 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 NDUFB4P9-201ENST00000511646 388 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 MTND1P35-201ENST00000526739 508 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AP001646.1-201ENST00000527936 915 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 TGIF1P1-201ENST00000558095 802 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AL031176.1-201ENST00000604554 466 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LARP7P1-201ENST00000605576 316 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AC012531.5-201ENST00000611375 151 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AL360181.4-201ENST00000621752 134 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AP003122.6-201ENST00000623831 495 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AC005609.4-201ENST00000625071 447 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 MFSD8-233ENST00000641482 4860 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 EXOC5P1-201ENST00000510543 1969 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL161912.2-201ENST00000565707 3007 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RNU4-35P-201ENST00000362588 141 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RNU6-1322P-201ENST00000364309 107 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RNU6-108P-201ENST00000365558 107 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RNU6-877P-201ENST00000383868 107 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 MTATP6P18-201ENST00000417994 673 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL353193.1-201ENST00000421444 268 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 DUTP6-201ENST00000425573 462 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC137499.1-201ENST00000427602 88 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RPL36AP51-201ENST00000487216 318 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC020893.1-201ENST00000502452 580 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 MLLT10P2-201ENST00000506434 249 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 SNORA70.14-201ENST00000516205 110 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RNU6-1281P-201ENST00000516223 105 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC022616.3-201ENST00000523940 148 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC104383.1-201ENST00000530297 370 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL359212.1-201ENST00000556608 614 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC060780.3-201ENST00000589464 80 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC007621.1-201ENST00000604544 437 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 RMST_8.1-201ENST00000610287 165 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL020991.1-201ENST00000612314 373 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AL391261.4-201ENST00000616012 481 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 uc_338.12-201ENST00000616344 181 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 AC009161.2-201ENST00000624626 138 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.18□□□□□ -1.74
VPS53Q5VIR6 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS53Q5VIR6 CASC19-280ENST00000642102 1351 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AL645937.1-201ENST00000641739 1652 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNU6-1097P-201ENST00000363586 107 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNY1P12-201ENST00000364251 105 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNY4P16-201ENST00000364768 94 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNU6-169P-201ENST00000365336 107 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 MIR184-201ENST00000384962 84 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RPS4XP8-201ENST00000402039 771 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 RNA5SP129-201ENST00000410276 118 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 ZNF90P2-204ENST00000419323 1075 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AC093156.1-201ENST00000440382 670 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 CALM1P1-201ENST00000442082 433 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AL121871.1-201ENST00000443413 436 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 AL357552.1-201ENST00000445254 415 ntBASIC4.17□□□□□ -1.74
VPS53Q5VIR6 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.17□□□□□ -1.74
VPS53Q5VIR6 MTCYBP18-201ENST00000501056 747 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms