Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU4-75P-201ENST00000364621 146 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 RNU6-328P-201ENST00000390887 106 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 HSPE1P8-201ENST00000406997 288 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 RNU2-66P-201ENST00000410650 161 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 RPS15AP12-201ENST00000419498 388 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 PIGFP2-201ENST00000421400 651 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC018630.2-202ENST00000422992 927 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC008850.1-201ENST00000427546 362 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AL589823.1-201ENST00000429577 183 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 RBMY2UP-201ENST00000453474 324 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC138853.1-201ENST00000503549 823 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC097462.2-201ENST00000504623 481 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 MTND2P33-201ENST00000506452 1031 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC093012.1-202ENST00000549403 582 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 MIR3913-1-201ENST00000577744 102 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC068790.2-201ENST00000602601 557 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC078795.2-201ENST00000602835 1252 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AL161729.4-201ENST00000604650 476 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 SNORA62.6-201ENST00000606322 83 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AL139286.2-201ENST00000606838 396 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 MIR7851-201ENST00000610611 160 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC122108.2-201ENST00000611946 526 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 MIR7106-201ENST00000612419 65 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC087241.4-201ENST00000612441 480 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 SDR42E1P2-201ENST00000614861 481 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC006338.1-201ENST00000618453 749 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC099842.1-201ENST00000619919 596 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC079684.1-201ENST00000621405 437 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC091905.1-201ENST00000624400 311 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AL136313.1-201ENST00000624804 202 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 AC090740.1-201ENST00000623193 2262 ntBASIC3.44□□□□□ -1.86
COL28A1Q2UY09 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 HSPE1P11-201ENST00000339579 310 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RNU4-35P-201ENST00000362588 141 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RPS3AP36-201ENST00000398190 775 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RPS15AP6-201ENST00000420703 385 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RPL31P12-201ENST00000422587 358 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 ARF4P2-201ENST00000430209 526 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 ATP5JP1-201ENST00000431631 322 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC104850.1-201ENST00000435940 476 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 ARPC3P1-201ENST00000437218 533 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RPS29P31-201ENST00000446147 164 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 GAPDHP27-201ENST00000447427 1020 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC140076.1-201ENST00000449897 361 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 HMGN2P7-201ENST00000456186 273 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 SNORD97-201ENST00000459187 142 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC010631.1-201ENST00000474150 156 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RBM43P1-201ENST00000476891 1081 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC105252.1-201ENST00000503089 286 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC091133.4-201ENST00000511142 308 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RNU1-61P-201ENST00000516107 151 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RNU2-10P-201ENST00000516375 211 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 SCARNA15.2-201ENST00000516409 127 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 RNU6-840P-201ENST00000517275 65 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 FAM60DP-201ENST00000524174 632 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC128657.1-201ENST00000549459 145 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC055876.1-202ENST00000567053 138 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC010546.1-201ENST00000569391 485 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC073648.5-201ENST00000603502 305 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC104763.2-201ENST00000604179 382 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AP000860.1-201ENST00000605250 559 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 BRDTP1-201ENST00000605735 677 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms