Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC010680.1-201ENST00000590024 3590 ntBASIC2.89□□□□□ -1.95
PTPN4P29074 AL161431.1-201ENST00000618966 4205 ntBASIC2.89□□□□□ -1.95
PTPN4P29074 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
PTPN4P29074 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PTPN4P29074 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
PTPN4P29074 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTPN4P29074 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN4P29074 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN4P29074 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
PTPN4P29074 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
PTPN4P29074 RNU6-433P-201ENST00000363216 104 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 RNU6-723P-201ENST00000383973 107 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 RNU6-432P-201ENST00000384196 109 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 RNU6-114P-201ENST00000384704 105 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 MIR514A1-201ENST00000385133 98 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 SNORD67-201ENST00000390833 111 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC098592.1-201ENST00000419352 333 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC008850.1-201ENST00000427546 362 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.88□□□□□ -1.95
PTPN4P29074 AL117351.1-201ENST00000438864 766 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.88□□□□□ -1.95
PTPN4P29074 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 AP1S2P1-201ENST00000457344 379 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC103975.1-201ENST00000482506 483 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 HMGB1P36-201ENST00000487709 576 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 RNU6-1129P-201ENST00000515964 104 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 RNA5SP291-201ENST00000517222 105 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 ATP5F1P5-201ENST00000526403 760 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN4P29074 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN4P29074 AC002400.1-201ENST00000569310 726 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN4P29074 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.88□□□□□ -1.95
PTPN4P29074 AL353778.1-201ENST00000603149 408 ntBASIC2.88□□□□□ -1.95
PTPN4P29074 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN4P29074 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN4P29074 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTPN4P29074 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RPL21P132-201ENST00000331267 462 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RNU5E-8P-201ENST00000363502 116 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RNU6-853P-201ENST00000364306 107 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 SNORA36C-201ENST00000384289 132 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RNU6-1035P-201ENST00000384477 107 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 Y_RNA.548-201ENST00000384656 105 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PTPN4P29074 RAP1BP1-201ENST00000412709 553 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 EEF1A1P41-201ENST00000414667 207 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL513477.1-202ENST00000417061 214 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN4P29074 AL512844.2-201ENST00000433990 593 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN4P29074 AL590639.1-201ENST00000456484 337 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RPS20P20-201ENST00000460498 340 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN4P29074 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN4P29074 CDC42P4-201ENST00000510507 563 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 RPL23AP94-201ENST00000512518 302 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN4P29074 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.87□□□□□ -1.95
PTPN4P29074 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN4P29074 ELOCP32-201ENST00000548625 324 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL355836.1-201ENST00000555951 870 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC090888.2-201ENST00000559765 1144 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AMZ2P1-203ENST00000565833 850 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 ISCA1P3-201ENST00000577104 373 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN4P29074 AC008739.2-201ENST00000597006 317 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC010620.2-201ENST00000600135 313 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC068313.1-201ENST00000604028 1008 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC112187.2-201ENST00000604345 283 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL035413.2-201ENST00000604801 525 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL136363.1-201ENST00000605349 337 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 AC093838.1-201ENST00000613014 469 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AL603758.1-201ENST00000618654 241 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 AC019226.1-201ENST00000625666 515 ntBASIC2.87□□□□□ -1.95
PTPN4P29074 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PTPN4P29074 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.87□□□□□ -1.95
PTPN4P29074 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.86□□□□□ -1.95
PTPN4P29074 Y_RNA.18-201ENST00000362461 102 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 SNORD56.5-201ENST00000364281 72 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 RNA5SP88-201ENST00000365560 109 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 RNU6-741P-201ENST00000383889 107 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 RNU6-253P-201ENST00000384730 105 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 RNU6-193P-201ENST00000410977 107 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.86□□□□□ -1.95
PTPN4P29074 BX119904.4-201ENST00000424402 301 ntBASIC2.86□□□□□ -1.95
PTPN4P29074 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms