Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-589P-201ENST00000516485 107 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 MIR2117-201ENST00000516780 80 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 AC016256.1-201ENST00000547971 354 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.82□□□□□ -1.48
COL9A1P20849 AC034229.5-201ENST00000624258 185 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 SCARNA4-202ENST00000625402 129 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.82□□□□□ -1.48
COL9A1P20849 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL9A1P20849 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL9A1P20849 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL9A1P20849 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 MFSD8-239ENST00000641590 2479 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 AC079741.1-201ENST00000321498 212 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 SNORA22-201ENST00000383907 134 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 RNU6-166P-201ENST00000384371 107 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 MIR1302-4-201ENST00000408701 150 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 COX6B1P1-201ENST00000415962 213 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL9A1P20849 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.81□□□□□ -1.48
COL9A1P20849 GSTM5P1-201ENST00000434751 660 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.81□□□□□ -1.48
COL9A1P20849 IGHV5-78-201ENST00000450948 295 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 RNU7-197P-201ENST00000458836 62 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 snoU13.1-201ENST00000459157 104 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 RPL31P13-201ENST00000484151 370 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 SNORA31.19-201ENST00000517079 126 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 CYCSP23-201ENST00000519781 313 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 AC090281.1-201ENST00000523019 276 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 AC090049.2-201ENST00000550377 109 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 MIR3145-201ENST00000580727 82 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 AC039056.2-201ENST00000622261 511 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 AP001340.1-201ENST00000624405 217 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 AC087516.1-201ENST00000561236 2428 ntBASIC5.81□□□□□ -1.48
COL9A1P20849 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
COL9A1P20849 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
COL9A1P20849 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.81□□□□□ -1.48
COL9A1P20849 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL9A1P20849 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
COL9A1P20849 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.8□□□□□ -1.48
COL9A1P20849 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.8□□□□□ -1.48
COL9A1P20849 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 RNU6-142P-201ENST00000384019 107 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 SNORA67-201ENST00000384423 137 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 RNU6-837P-201ENST00000391056 108 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AL035079.1-201ENST00000405210 287 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 Y_RNA.595-201ENST00000410403 105 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AC015977.1-201ENST00000418887 292 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 RPL23AP83-201ENST00000434984 473 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AL359073.1-201ENST00000448036 403 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 RN7SL447P-201ENST00000494711 245 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 TOMM22P4-201ENST00000511318 336 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 RNU5E-3P-201ENST00000515913 68 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 Y_RNA.712-201ENST00000517011 92 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 UBL5P4-201ENST00000562584 236 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.8□□□□□ -1.48
COL9A1P20849 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.8□□□□□ -1.48
COL9A1P20849 AC087385.3-201ENST00000620477 187 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AL354798.1-201ENST00000622505 329 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 AC091905.4-201ENST00000623432 202 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
COL9A1P20849 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.8□□□□□ -1.48
COL9A1P20849 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.8□□□□□ -1.48
COL9A1P20849 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL9A1P20849 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.8□□□□□ -1.48
COL9A1P20849 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms