Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC1.13□□□□□ -2.23
COL6A3P12111 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.13□□□□□ -2.23
COL6A3P12111 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.13□□□□□ -2.23
COL6A3P12111 AC138473.1-201ENST00000605717 526 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 AC011330.2-201ENST00000621680 635 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 AC131280.1-202ENST00000624067 4211 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL6A3P12111 Y_RNA.100-201ENST00000363141 102 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 RNU6-1126P-201ENST00000384002 107 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 RNU4-31P-201ENST00000384211 141 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 RPS27P1-201ENST00000450552 247 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.13□□□□□ -2.23
COL6A3P12111 RPS15AP34-201ENST00000487776 387 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.13□□□□□ -2.23
COL6A3P12111 AK3P2-201ENST00000507976 429 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 PRELID3BP4-201ENST00000515476 571 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.13□□□□□ -2.23
COL6A3P12111 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.13□□□□□ -2.23
COL6A3P12111 MFSD8-213ENST00000641134 1327 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 CR382285.2-201ENST00000624662 1495 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 Y_RNA.413-201ENST00000384007 102 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RNU6-16P-201ENST00000384385 107 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 SUMO2P12-201ENST00000405924 140 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.12□□□□□ -2.23
COL6A3P12111 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A3P12111 Y_RNA.754-201ENST00000476024 102 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 MTCYBP35-201ENST00000503630 1137 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A3P12111 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 OR4V1P-201ENST00000525394 1140 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.12□□□□□ -2.23
COL6A3P12111 Y_RNA.790-201ENST00000614282 102 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 Y_RNA.782-201ENST00000614695 102 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RNA5SP25-201ENST00000410815 110 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RNU6-603P-201ENST00000411403 107 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 HMGB1P49-201ENST00000418882 569 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RPL31P58-201ENST00000469001 379 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RNU6-173P-201ENST00000364215 104 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 MIR591-201ENST00000385290 95 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RNU11-5P-201ENST00000391216 129 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 SNORA79B-201ENST00000410557 148 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC1.12□□□□□ -2.23
COL6A3P12111 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.12□□□□□ -2.23
COL6A3P12111 AC093716.1-201ENST00000435923 377 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 IFNA20P-201ENST00000436840 528 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A3P12111 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.12□□□□□ -2.23
COL6A3P12111 CBX3P7-201ENST00000532876 502 ntBASIC1.12□□□□□ -2.23
COL6A3P12111 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
COL6A3P12111 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL6A3P12111 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.11□□□□□ -2.23
COL6A3P12111 CYCSP2-201ENST00000558168 301 ntBASIC1.11□□□□□ -2.23
COL6A3P12111 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC1.11□□□□□ -2.23
COL6A3P12111 AC093852.1-201ENST00000503587 266 ntBASIC1.11□□□□□ -2.23
COL6A3P12111 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.11□□□□□ -2.23
COL6A3P12111 MTCO1P40-201ENST00000574371 625 ntBASIC1.11□□□□□ -2.23
COL6A3P12111 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.11□□□□□ -2.23
COL6A3P12111 PABPC1P7-201ENST00000413177 1513 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 SNORD114-15-201ENST00000364687 72 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 RNU6-347P-201ENST00000516658 105 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 OR6C7P-201ENST00000547875 934 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 AC018754.1-201ENST00000607486 925 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL6A3P12111 RNU6-112P-201ENST00000363599 104 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 RNU6-288P-201ENST00000363690 104 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 SNORA2A-201ENST00000383885 135 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.1□□□□□ -2.23
COL6A3P12111 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.1□□□□□ -2.23
COL6A3P12111 AP003117.1-201ENST00000602771 554 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 SNHG22-203ENST00000617833 660 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 MIR6759-201ENST00000638110 65 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 RNU6-629P-201ENST00000384061 103 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.1□□□□□ -2.23
COL6A3P12111 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
COL6A3P12111 RNA5SP285-201ENST00000516619 119 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.1□□□□□ -2.23
COL6A3P12111 AC008962.1-201ENST00000605729 304 ntBASIC1.1□□□□□ -2.23
COL6A3P12111 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
COL6A3P12111 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
COL6A3P12111 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.09□□□□□ -2.23
COL6A3P12111 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.09□□□□□ -2.23
COL6A3P12111 AP004247.1-201ENST00000531556 1289 ntBASIC1.09□□□□□ -2.23
COL6A3P12111 AC108706.1-201ENST00000611053 297 ntBASIC1.09□□□□□ -2.23
COL6A3P12111 AC092140.2-201ENST00000618027 521 ntBASIC1.09□□□□□ -2.23
COL6A3P12111 AL356118.1-201ENST00000635272 1078 ntBASIC1.09□□□□□ -2.23
COL6A3P12111 DPPA3P1-201ENST00000448050 469 ntBASIC1.09□□□□□ -2.24
COL6A3P12111 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.09□□□□□ -2.24
COL6A3P12111 SNORA31.23-201ENST00000517219 133 ntBASIC1.09□□□□□ -2.24
COL6A3P12111 HSPE1P20-201ENST00000538133 289 ntBASIC1.09□□□□□ -2.24
COL6A3P12111 MIR6857-201ENST00000613267 93 ntBASIC1.09□□□□□ -2.24
COL6A3P12111 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
COL6A3P12111 SSR1P1-201ENST00000407630 814 ntBASIC1.08□□□□□ -2.24
COL6A3P12111 Z75741.2-201ENST00000417272 1167 ntBASIC1.08□□□□□ -2.24
COL6A3P12111 MORF4L1P7-201ENST00000426038 703 ntBASIC1.08□□□□□ -2.24
COL6A3P12111 MTCO1P43-201ENST00000431831 488 ntBASIC1.08□□□□□ -2.24
COL6A3P12111 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.08□□□□□ -2.24
COL6A3P12111 AC087465.1-201ENST00000560574 245 ntBASIC1.08□□□□□ -2.24
COL6A3P12111 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
COL6A3P12111 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms