Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 U3.42-201ENST00000408746 214 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 RNU2-36P-201ENST00000410361 191 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC126124.2-201ENST00000413542 321 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC008850.1-201ENST00000427546 362 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AP000907.1-201ENST00000428428 510 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC073063.1-201ENST00000434352 607 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC073614.1-201ENST00000438690 650 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 USP9YP15-201ENST00000442391 422 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC079448.1-201ENST00000449377 373 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC140076.1-201ENST00000449897 361 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 CYCSP35-201ENST00000451978 304 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AP002884.2-201ENST00000471647 395 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 RBM43P1-201ENST00000476891 1081 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 RPL31P60-201ENST00000478450 367 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC011825.1-201ENST00000484967 388 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC138853.1-201ENST00000503549 823 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 MTND2P33-201ENST00000506452 1031 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 RNU6-390P-201ENST00000516259 103 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 RANP9-201ENST00000519957 271 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 IGHV3-76-201ENST00000522465 295 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC022616.3-201ENST00000523940 148 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 MIR4474-201ENST00000579189 78 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC006116.10-201ENST00000591836 581 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AL606834.2-201ENST00000602954 668 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 AL136363.1-201ENST00000605349 337 ntBASIC2.94□□□□□ -1.94
NKX3-1Q99801 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
NKX3-1Q99801 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
NKX3-1Q99801 AC005832.2-201ENST00000538921 1430 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
NKX3-1Q99801 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
NKX3-1Q99801 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
NKX3-1Q99801 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 OR4G2P-202ENST00000641004 1759 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU1-75P-201ENST00000347264 129 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU5A-1-201ENST00000362698 116 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU6-223P-201ENST00000362830 107 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU6-511P-201ENST00000363496 107 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 SNORD46.1-201ENST00000364139 104 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU6-169P-201ENST00000365336 107 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 RNU6-282P-201ENST00000365357 103 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 TXNP7-201ENST00000406296 293 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 ATP5A1P2-201ENST00000412323 255 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 BX842559.1-201ENST00000419615 532 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC010975.2-201ENST00000427781 588 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC093106.2-201ENST00000428212 385 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC006946.1-201ENST00000429106 328 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC119618.1-201ENST00000434191 222 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 HMGN2P20-201ENST00000437531 273 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC016696.1-201ENST00000446949 318 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 MTND1P12-201ENST00000455231 147 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC004924.1-201ENST00000480160 781 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 RN7SKP298-201ENST00000515950 94 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC005476.1-201ENST00000554427 397 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 MIR3682-201ENST00000581338 84 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 MIR4444-1-201ENST00000581696 74 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 MIR4444-2-201ENST00000584390 74 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC084782.3-201ENST00000612282 578 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC005332.10-201ENST00000612725 619 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms