Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.26□□□□□ -1.73
NUP88Q99567 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 XIAPP3-201ENST00000312918 795 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 Y_RNA.159-201ENST00000363674 87 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 SNORA36C-201ENST00000384289 132 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 MIR218-2-201ENST00000385006 110 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 RNU6-780P-201ENST00000391030 104 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 SNORA11.1-201ENST00000408133 129 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC073063.1-201ENST00000434352 607 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 HMGB3P12-201ENST00000438745 556 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.26□□□□□ -1.73
NUP88Q99567 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 RPL21P104-201ENST00000464143 478 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC006512.1-201ENST00000468816 291 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 VN1R17P-201ENST00000472048 1090 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.26□□□□□ -1.73
NUP88Q99567 Y_RNA.704-201ENST00000516851 102 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 RN7SKP289-201ENST00000517244 295 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.26□□□□□ -1.73
NUP88Q99567 AL359212.1-201ENST00000556608 614 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 HMGB1P33-201ENST00000563485 527 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC055876.1-202ENST00000567053 138 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.26□□□□□ -1.73
NUP88Q99567 BDH2P1-201ENST00000602288 736 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC025449.1-201ENST00000603896 529 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC007179.3-201ENST00000604976 235 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.26□□□□□ -1.73
NUP88Q99567 AC004696.1-201ENST00000614345 607 ntBASIC4.26□□□□□ -1.73
NUP88Q99567 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.26□□□□□ -1.73
NUP88Q99567 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.26□□□□□ -1.73
NUP88Q99567 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.26□□□□□ -1.73
NUP88Q99567 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
NUP88Q99567 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
NUP88Q99567 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.25□□□□□ -1.73
NUP88Q99567 Y_RNA.381-201ENST00000365666 102 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NUP88Q99567 HSPE1P8-201ENST00000406997 288 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.25□□□□□ -1.73
NUP88Q99567 USP9YP18-201ENST00000425912 695 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AL159987.2-201ENST00000432754 307 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 NDUFB1P1-201ENST00000435191 180 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.25□□□□□ -1.73
NUP88Q99567 RPL7P54-201ENST00000438336 674 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.25□□□□□ -1.73
NUP88Q99567 RPL21P23-201ENST00000446654 460 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NUP88Q99567 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.25□□□□□ -1.73
NUP88Q99567 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.25□□□□□ -1.73
NUP88Q99567 AC011352.1-201ENST00000512300 793 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 ARL2BPP6-201ENST00000512757 439 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
NUP88Q99567 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.25□□□□□ -1.73
NUP88Q99567 AP001804.3-201ENST00000525146 880 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AP003072.2-201ENST00000527756 676 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.25□□□□□ -1.73
NUP88Q99567 AP003034.1-201ENST00000534621 422 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 NCAPGP2-201ENST00000557911 754 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 DPPA3P3-201ENST00000603842 430 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AC007363.1-201ENST00000604736 620 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 AC106900.2-201ENST00000604994 317 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
NUP88Q99567 AP000553.6-201ENST00000641242 118 ntBASIC4.25□□□□□ -1.73
NUP88Q99567 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
NUP88Q99567 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.25□□□□□ -1.73
NUP88Q99567 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.25□□□□□ -1.73
NUP88Q99567 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
NUP88Q99567 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.24□□□□□ -1.73
NUP88Q99567 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
NUP88Q99567 Y_RNA.367-201ENST00000365544 101 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 Y_RNA.481-201ENST00000384373 102 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC068050.1-201ENST00000394891 380 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.24□□□□□ -1.73
NUP88Q99567 SDCBPP3-201ENST00000419629 891 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 CYP4F29P-201ENST00000420685 446 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NUP88Q99567 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.24□□□□□ -1.73
NUP88Q99567 GAPDHP27-201ENST00000447427 1020 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.24□□□□□ -1.73
NUP88Q99567 RPS20P20-201ENST00000460498 340 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AL121769.1-201ENST00000469473 401 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC092989.1-201ENST00000481235 277 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC019235.1-201ENST00000503847 207 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC116562.3-201ENST00000506136 177 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.24□□□□□ -1.73
NUP88Q99567 SUMO2P20-201ENST00000520803 283 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC068587.5-201ENST00000528506 175 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.24□□□□□ -1.73
NUP88Q99567 MIR3921-201ENST00000577308 85 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.24□□□□□ -1.73
NUP88Q99567 AC002545.1-201ENST00000592511 181 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AL161756.2-201ENST00000604597 246 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 RBM11P1-201ENST00000604951 799 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AP001596.2-201ENST00000608410 312 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.24□□□□□ -1.73
NUP88Q99567 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.24□□□□□ -1.73
NUP88Q99567 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms