Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP001804.3-201ENST00000525146 880 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AP002404.1-201ENST00000532005 451 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 SNRPGP16-201ENST00000533275 226 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.21□□□□□ -1.9
USP28Q96RU2 HPRT1P3-201ENST00000539521 576 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC126177.3-201ENST00000551839 688 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.21□□□□□ -1.9
USP28Q96RU2 AC034268.2-201ENST00000571784 482 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.21□□□□□ -1.9
USP28Q96RU2 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.21□□□□□ -1.9
USP28Q96RU2 MIR4307-201ENST00000582802 84 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 MIR3611-201ENST00000584484 83 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP28Q96RU2 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.21□□□□□ -1.9
USP28Q96RU2 AC012360.2-201ENST00000609349 391 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC092656.1-203ENST00000624134 423 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC025048.6-202ENST00000627667 438 ntBASIC3.21□□□□□ -1.9
USP28Q96RU2 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.21□□□□□ -1.9
USP28Q96RU2 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP28Q96RU2 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP28Q96RU2 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP28Q96RU2 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP28Q96RU2 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC006378.2-201ENST00000623178 2476 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP28Q96RU2 RNU6-744P-201ENST00000365557 107 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.2□□□□□ -1.9
USP28Q96RU2 RNU6-1316P-201ENST00000384242 108 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 RNU6-809P-201ENST00000384461 107 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 RNY3P10-201ENST00000384764 102 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 DEFB108C-201ENST00000400154 252 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 RN7SKP266-201ENST00000410232 287 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 MRPL50P2-201ENST00000416821 482 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 USP9YP36-201ENST00000424581 829 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.2□□□□□ -1.9
USP28Q96RU2 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AL022238.1-201ENST00000442557 355 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AP001992.1-205ENST00000462248 379 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC096751.1-202ENST00000502691 1067 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC079140.3-201ENST00000511111 550 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC024589.1-201ENST00000512207 263 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC116347.2-201ENST00000514912 523 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.2□□□□□ -1.9
USP28Q96RU2 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC107016.2-201ENST00000547968 190 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AGGF1P4-201ENST00000568249 801 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC012213.3-201ENST00000577199 777 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 MIR5697-201ENST00000578045 78 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC068276.1-201ENST00000605793 379 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AC080013.4-201ENST00000607624 649 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AL357080.1-201ENST00000617394 239 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC000403.1-201ENST00000613696 3585 ntBASIC3.2□□□□□ -1.9
USP28Q96RU2 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
USP28Q96RU2 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP28Q96RU2 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP28Q96RU2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP28Q96RU2 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.19□□□□□ -1.9
USP28Q96RU2 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
USP28Q96RU2 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.19□□□□□ -1.9
USP28Q96RU2 OR5H15-201ENST00000383696 930 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 SNORA75-201ENST00000384158 137 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 Y_RNA.559-201ENST00000384686 107 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 RN7SKP27-201ENST00000410684 333 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC092447.6-201ENST00000414578 210 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 MTATP6P27-201ENST00000416987 621 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.19□□□□□ -1.9
USP28Q96RU2 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.19□□□□□ -1.9
USP28Q96RU2 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.19□□□□□ -1.9
USP28Q96RU2 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP28Q96RU2 USP9YP14-201ENST00000430663 563 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AL139132.1-201ENST00000431587 344 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 RPL37P21-201ENST00000435890 276 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 ST13P20-201ENST00000447996 1065 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 MTCO1P42-201ENST00000457379 726 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.19□□□□□ -1.9
USP28Q96RU2 FAM172BP-201ENST00000487497 1089 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AP001025.2-201ENST00000490908 477 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC106872.3-201ENST00000495104 446 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 MTND3P5-201ENST00000512798 333 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 RNA5SP341-201ENST00000516261 117 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 SNORA31.8-201ENST00000516327 108 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 SNORA9.3-201ENST00000516383 129 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 SCARNA13-201ENST00000516672 275 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC018630.1-201ENST00000541376 925 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 H3F3AP1-201ENST00000559984 334 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 MIR3605-201ENST00000583214 100 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.19□□□□□ -1.9
USP28Q96RU2 AC012468.1-201ENST00000604888 430 ntBASIC3.19□□□□□ -1.9
USP28Q96RU2 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms