Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR144-201ENST00000384886 86 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 XKRYP6-201ENST00000440468 1116 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 XKRYP3-201ENST00000442113 1116 ntBASIC0.95□□□□□ -2.26
VPS13AQ96RL7 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
VPS13AQ96RL7 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC000111.3-201ENST00000433478 193 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 SNORA48.9-201ENST00000516419 162 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AL158032.1-201ENST00000605401 106 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 Y_RNA.549-201ENST00000384657 102 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 RNU6-997P-201ENST00000384725 107 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 SSXP9-201ENST00000417503 292 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC013470.3-201ENST00000420252 1194 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 RPS29P23-201ENST00000458635 123 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC010200.2-201ENST00000605098 235 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 BX322635.1-201ENST00000605804 496 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 AC022493.1-201ENST00000492984 337 ntBASIC0.94□□□□□ -2.26
VPS13AQ96RL7 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.94□□□□□ -2.26
VPS13AQ96RL7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 RNU6-17P-201ENST00000384245 107 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 RNU6-18P-201ENST00000384527 107 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 MIR936-201ENST00000401264 98 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AC244035.1-201ENST00000430042 390 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 RPL31P58-201ENST00000469001 379 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AP005597.4-201ENST00000526762 229 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AC004808.1-201ENST00000627671 721 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 MIR513A1-201ENST00000385138 129 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AC019070.1-201ENST00000415008 1024 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 ARL5AP2-201ENST00000444698 533 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 SNRPGP3-201ENST00000469405 227 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AK3P2-201ENST00000507976 429 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AL132857.1-201ENST00000555180 708 ntBASIC0.93□□□□□ -2.26
VPS13AQ96RL7 AL121871.1-201ENST00000443413 436 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 AC022431.1-201ENST00000450941 438 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 HMGB3P30-201ENST00000457863 606 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 MIR591-201ENST00000385290 95 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 HSPE1P20-201ENST00000538133 289 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 SNORD114-21-201ENST00000606412 72 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 MTND4P27-201ENST00000450813 1354 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 MIR150-201ENST00000385048 84 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 MIR1285-1-201ENST00000408593 84 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 BZW1P2-201ENST00000473537 826 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 RPL30P12-201ENST00000474666 353 ntBASIC0.92□□□□□ -2.26
VPS13AQ96RL7 LIAS-206ENST00000513731 826 ntTSL 5 BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
VPS13AQ96RL7 AP000648.3-201ENST00000623539 4507 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 RNU6-222P-201ENST00000362438 107 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 SNORA6-201ENST00000384033 151 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 MIR514B-201ENST00000516774 80 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 FAM71BP1-201ENST00000604431 523 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 COX6CP18-201ENST00000448769 222 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS13AQ96RL7 AC091057.2-201ENST00000602594 792 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 MIR6840-201ENST00000611937 71 ntBASIC0.91□□□□□ -2.26
VPS13AQ96RL7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.9□□□□□ -2.26
VPS13AQ96RL7 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC0.9□□□□□ -2.26
VPS13AQ96RL7 AC092754.2-201ENST00000463506 460 ntBASIC0.9□□□□□ -2.26
VPS13AQ96RL7 AP003497.1-201ENST00000528472 562 ntBASIC0.9□□□□□ -2.26
VPS13AQ96RL7 MTCO1P40-201ENST00000574371 625 ntBASIC0.9□□□□□ -2.26
VPS13AQ96RL7 AC138473.1-201ENST00000605717 526 ntBASIC0.9□□□□□ -2.26
VPS13AQ96RL7 CR382285.2-201ENST00000624662 1495 ntBASIC0.9□□□□□ -2.26
VPS13AQ96RL7 AL136164.4-201ENST00000625013 2135 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.9□□□□□ -2.27
VPS13AQ96RL7 RNU6-1235P-201ENST00000384559 107 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 IPO7P1-201ENST00000442031 636 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 ATG12P2-201ENST00000456830 416 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 RNU6-498P-201ENST00000459468 107 ntBASIC0.9□□□□□ -2.27
VPS13AQ96RL7 AC074029.2-201ENST00000551045 634 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms