Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.274-201ENST00000364714 101 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 RNU11-5P-201ENST00000391216 129 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 OR51A5P-201ENST00000415429 942 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 RPL37P25-201ENST00000507308 276 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 RNA5SP395-201ENST00000516567 118 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 MTCO1P40-201ENST00000574371 625 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 AC109583.1-201ENST00000432156 268 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 RPL7P34-201ENST00000433316 712 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 AC104472.2-201ENST00000469035 601 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 OR5AQ1P-201ENST00000527596 927 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 AC121761.2-201ENST00000617300 689 ntBASIC1.07□□□□□ -2.24
CHD9Q3L8U1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.07□□□□□ -2.24
CHD9Q3L8U1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 DYNLL1P5-201ENST00000467158 270 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC114322.1-201ENST00000506771 926 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 DEFB108E-201ENST00000524692 240 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 MIR6076-201ENST00000617521 113 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 MIR6513-201ENST00000621188 64 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 GDI2P2-201ENST00000445131 608 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC009901.1-201ENST00000506703 541 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 VN1R81P-201ENST00000602085 372 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 DPRXP5-201ENST00000604662 539 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 MIR7974-201ENST00000615835 79 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC099654.7-201ENST00000635788 2127 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 RPL7P27-201ENST00000403775 720 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 SNORD59.2-201ENST00000516873 68 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 RNA5SP330-201ENST00000517096 96 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AC245128.3-201ENST00000594721 748 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 AL161912.3-201ENST00000605404 628 ntBASIC1.06□□□□□ -2.24
CHD9Q3L8U1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 MTND5P9-201ENST00000503854 1755 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 RNA5SP354-201ENST00000391247 136 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 MTATP6P22-201ENST00000507369 598 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC110792.2-201ENST00000510278 224 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 RNA5SP82-201ENST00000516707 92 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 IMMP1LP2-201ENST00000552954 492 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 MIR4446-201ENST00000578505 67 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 MIR2909-201ENST00000617113 69 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AL161722.3-201ENST00000605789 2983 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 Y_RNA.471-201ENST00000384312 102 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC109780.2-201ENST00000413467 845 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AL596276.1-201ENST00000434465 418 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 RNU7-27P-201ENST00000459281 62 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 CBX3P7-201ENST00000532876 502 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 OR6C73P-201ENST00000546432 358 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC211469.2-201ENST00000605461 205 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 RPL23AP88-201ENST00000605759 454 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AC139769.3-201ENST00000618383 175 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 PABPC1P7-201ENST00000413177 1513 ntBASIC1.05□□□□□ -2.24
CHD9Q3L8U1 AL354685.2-201ENST00000448218 1447 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RNU6-335P-201ENST00000364563 113 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RNU6-532P-201ENST00000384318 107 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 HMGB3P31-201ENST00000413333 595 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 SSXP9-201ENST00000417503 292 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC241520.1-201ENST00000422654 1099 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC007560.1-201ENST00000426912 237 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AL691517.1-201ENST00000440833 1235 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 OR51B8P-201ENST00000449892 769 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RPS29P23-201ENST00000458635 123 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC010735.1-201ENST00000567305 1026 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 MTCO3P24-201ENST00000572729 782 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RNU6-1331P-201ENST00000363658 106 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 USP9YP33-201ENST00000412220 421 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 USP9YP35-201ENST00000435696 412 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 HMGN2P21-201ENST00000447764 270 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RNA5SP233-201ENST00000459153 113 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 RNA5SP468-201ENST00000516782 93 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms