Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC0.81□□□□□ -2.28
COL7A1Q02388 AL161713.1-201ENST00000555538 145 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC0.81□□□□□ -2.28
COL7A1Q02388 MIR2909-201ENST00000617113 69 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-368P-201ENST00000620928 107 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-538P-201ENST00000622329 107 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 Clostridiales-1.3-201ENST00000637703 147 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.81□□□□□ -2.28
COL7A1Q02388 MIR330-201ENST00000362196 94 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-1263P-201ENST00000384601 106 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC074117.2-201ENST00000417130 397 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 MRPS36P1-201ENST00000421291 307 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 MTND2P9-201ENST00000422293 931 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC004941.2-201ENST00000427009 228 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AL596276.1-201ENST00000434465 418 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC234064.1-201ENST00000436312 247 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 MTND4LP12-201ENST00000448237 295 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 PSPHP1-201ENST00000450062 261 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 LRRC34P2-201ENST00000514850 553 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 OR4V1P-201ENST00000525394 1140 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC018754.1-201ENST00000607486 925 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AL445493.3-201ENST00000619568 477 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC114546.3-201ENST00000623582 1734 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 MTND4P31-201ENST00000425607 1343 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC130650.2-201ENST00000618736 2403 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 MTND4P12-201ENST00000498999 1377 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC0.8□□□□□ -2.28
COL7A1Q02388 DEFB108F-201ENST00000344638 222 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 RNU6-666P-201ENST00000363499 107 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 HSPE1P1-201ENST00000421494 318 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 RPL30P4-201ENST00000429309 333 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 PGBD4P3-201ENST00000440731 581 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.8□□□□□ -2.28
COL7A1Q02388 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.8□□□□□ -2.28
COL7A1Q02388 RPL9P9-202ENST00000466501 579 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.8□□□□□ -2.28
COL7A1Q02388 AC090897.2-201ENST00000581715 130 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.8□□□□□ -2.28
COL7A1Q02388 RNY4P3-201ENST00000365254 95 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 SUMO2P12-201ENST00000405924 140 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 MTCO1P43-201ENST00000431831 488 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 Z96811.1-201ENST00000445880 108 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 AC108706.1-201ENST00000611053 297 ntBASIC0.8□□□□□ -2.28
COL7A1Q02388 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
COL7A1Q02388 Y_RNA.488-201ENST00000384403 102 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 RNU1-101P-201ENST00000391171 127 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.79□□□□□ -2.28
COL7A1Q02388 AC233266.2-201ENST00000567067 528 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC0.79□□□□□ -2.28
COL7A1Q02388 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
COL7A1Q02388 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
COL7A1Q02388 MIR532-201ENST00000385025 91 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 RNU11-5P-201ENST00000391216 129 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 RNU2-40P-201ENST00000410833 196 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 RPL7P34-201ENST00000433316 712 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 RPS15AP34-201ENST00000487776 387 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
COL7A1Q02388 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC0.79□□□□□ -2.28
COL7A1Q02388 YWHAQP7-201ENST00000603536 658 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 AC113368.1-201ENST00000603736 382 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 AC116618.1-201ENST00000634617 774 ntBASIC0.79□□□□□ -2.28
COL7A1Q02388 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.79□□□□□ -2.28
COL7A1Q02388 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.79□□□□□ -2.28
COL7A1Q02388 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC0.79□□□□□ -2.28
COL7A1Q02388 Y_RNA.571-201ENST00000384753 98 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC233728.2-201ENST00000425348 757 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 ZNF965P-201ENST00000432501 817 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC0.78□□□□□ -2.28
COL7A1Q02388 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.78□□□□□ -2.28
COL7A1Q02388 AC234775.1-201ENST00000454247 670 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC0.78□□□□□ -2.28
COL7A1Q02388 RNA5SP233-201ENST00000459153 113 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC093281.2-201ENST00000510153 597 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC0.78□□□□□ -2.28
COL7A1Q02388 MIR4512-201ENST00000583257 77 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 MIR8087-201ENST00000612745 78 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 MFSD8-213ENST00000641134 1327 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 RNU6-997P-201ENST00000384725 107 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 RPL5P19-201ENST00000404228 893 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC0.78□□□□□ -2.28
COL7A1Q02388 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC0.78□□□□□ -2.28
COL7A1Q02388 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC0.78□□□□□ -2.28
COL7A1Q02388 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC0.78□□□□□ -2.28
COL7A1Q02388 AC013244.3-201ENST00000605614 388 ntBASIC0.78□□□□□ -2.28
COL7A1Q02388 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC0.78□□□□□ -2.28
COL7A1Q02388 IL33-203ENST00000456383 2501 ntTSL 5 BASIC0.78□□□□□ -2.28
COL7A1Q02388 Y_RNA.457-201ENST00000384237 111 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 Z86062.1-201ENST00000406773 777 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC0.78□□□□□ -2.29
COL7A1Q02388 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC0.78□□□□□ -2.29
COL7A1Q02388 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC0.78□□□□□ -2.29
COL7A1Q02388 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.78□□□□□ -2.29
COL7A1Q02388 AL132857.1-201ENST00000555180 708 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC0.78□□□□□ -2.29
COL7A1Q02388 AC010735.1-201ENST00000567305 1026 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 MIR4295-201ENST00000585286 85 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 DUXAP4-201ENST00000603046 613 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 AC090517.3-201ENST00000625170 141 ntBASIC0.78□□□□□ -2.29
COL7A1Q02388 HMGB3P10-201ENST00000434734 572 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms