Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TGIF1P1-201ENST00000558095 802 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 AC136619.2-201ENST00000563361 631 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN9P43378 MIR3690-201ENST00000580266 75 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.6□□□□□ -1.83
PTPN9P43378 BNIP3P33-201ENST00000598912 569 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 SNORA51-201ENST00000606420 132 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 AC244100.1-202ENST00000621554 382 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 FRG1KP-201ENST00000623592 341 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN9P43378 AC068137.3-201ENST00000639191 341 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 AC073869.6-201ENST00000640656 341 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PTPN9P43378 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN9P43378 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN9P43378 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN9P43378 AL133383.2-201ENST00000622958 2336 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN9P43378 AC005183.1-201ENST00000603687 1979 ntBASIC3.6□□□□□ -1.83
PTPN9P43378 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 AC092326.2-201ENST00000624772 1561 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN9P43378 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 AL513302.2-201ENST00000562313 1842 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 DEFB108F-201ENST00000344638 222 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 RNU6-181P-201ENST00000363225 107 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 SNORA23-201ENST00000365128 182 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 SNORD17-201ENST00000390930 237 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 EI24P2-201ENST00000397776 1076 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC110754.1-201ENST00000399740 601 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 RN7SKP27-201ENST00000410684 333 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 RPL21P24-201ENST00000413752 448 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 AC079780.1-201ENST00000428259 207 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC073464.1-201ENST00000429823 534 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC091286.1-201ENST00000431233 461 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 USP12PX-201ENST00000432383 1057 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC073063.1-201ENST00000434352 607 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 USP9YP28-201ENST00000435142 589 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 MTND1P4-201ENST00000435196 415 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC079781.2-201ENST00000446424 169 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 RPL21P104-201ENST00000464143 478 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 SNRPGP3-201ENST00000469405 227 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 AC021205.2-201ENST00000480069 347 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC023194.1-201ENST00000493084 308 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AP002812.1-201ENST00000495378 474 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC004062.1-201ENST00000509926 645 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 RNU6-445P-201ENST00000516949 107 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC090572.1-201ENST00000519251 160 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 SNRPGP16-201ENST00000533275 226 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AP003034.1-201ENST00000534621 422 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 TPRKBP2-201ENST00000565969 475 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 MIR4425-201ENST00000580572 84 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN9P43378 AC006557.5-201ENST00000603126 811 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC245389.1-201ENST00000605141 529 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AP000860.1-201ENST00000605250 559 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 AC092794.1-201ENST00000612734 582 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 XIST_intron.1-201ENST00000619444 68 ntBASIC3.59□□□□□ -1.83
PTPN9P43378 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN9P43378 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.83
PTPN9P43378 AL049781.1-201ENST00000623195 3585 ntBASIC3.59□□□□□ -1.84
PTPN9P43378 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PTPN9P43378 AC027514.1-201ENST00000588561 1603 ntBASIC3.59□□□□□ -1.84
PTPN9P43378 AC091152.2-201ENST00000591628 2569 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
PTPN9P43378 AL137003.2-201ENST00000606924 2538 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PTPN9P43378 RNU6-600P-201ENST00000362524 99 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 RNU4-35P-201ENST00000362588 141 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.58□□□□□ -1.84
PTPN9P43378 MIR184-201ENST00000384962 84 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 MIR218-2-201ENST00000385006 110 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.58□□□□□ -1.84
PTPN9P43378 AL359634.1-202ENST00000404721 284 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 HSPE1P26-201ENST00000405341 275 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 RNU2-37P-201ENST00000410695 177 ntBASIC3.58□□□□□ -1.84
PTPN9P43378 UBE2V1P10-201ENST00000414685 269 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms