Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC006504.1-201ENST00000562493 3666 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.303-201ENST00000364998 94 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MIR634-201ENST00000385208 97 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RNU6-882P-201ENST00000391025 103 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC068050.1-201ENST00000394891 380 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 HSPE1P12-201ENST00000412576 301 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RPL7AP73-201ENST00000413490 353 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 SSXP9-201ENST00000417503 292 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RPL7P54-201ENST00000438336 674 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 HMGB1P37-201ENST00000439613 609 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 NOTCH2P1-201ENST00000443481 624 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 DDX3P2-201ENST00000446138 111 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RPS15AP36-201ENST00000492022 382 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC005921.1-201ENST00000510589 286 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC114797.1-201ENST00000514003 728 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RNU6-358P-201ENST00000516564 75 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 NRON-201ENST00000517270 370 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 HMGN1P28-201ENST00000521340 364 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AP004242.1-201ENST00000533701 349 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RPL21P12-201ENST00000559810 515 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MIR548S-201ENST00000581352 82 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL162413.1-201ENST00000603198 110 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AL121772.2-201ENST00000614331 297 ntBASIC3.78□□□□□ -1.8
VPS4AQ9UN37 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.78□□□□□ -1.8
VPS4AQ9UN37 DDX10P1-201ENST00000448545 1933 ntBASIC3.78□□□□□ -1.81
VPS4AQ9UN37 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.81
VPS4AQ9UN37 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RNU6-960P-201ENST00000364056 120 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 Y_RNA.367-201ENST00000365544 101 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RN7SKP285-201ENST00000410137 318 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RNU2-36P-201ENST00000410361 191 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 MRPL50P2-201ENST00000416821 482 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 SNRPEP10-201ENST00000420249 274 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL606489.2-201ENST00000433886 234 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 HMGB3P12-201ENST00000438745 556 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL138799.3-201ENST00000438968 350 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC016691.1-201ENST00000441321 413 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 MTCO3P45-201ENST00000443036 613 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC234775.1-201ENST00000454247 670 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RNU6-261P-201ENST00000459506 102 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RPS27AP1-201ENST00000475545 471 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC126389.1-201ENST00000477436 290 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RNU6-1281P-201ENST00000516223 105 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 SNORA31.22-201ENST00000517204 135 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 FAM60DP-201ENST00000524174 632 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 MTND1P35-201ENST00000526739 508 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC123904.3-201ENST00000547218 814 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC010928.3-201ENST00000587712 541 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC007687.1-201ENST00000602704 304 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL592436.1-201ENST00000605135 558 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL121992.2-201ENST00000606262 256 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AP001486.3-201ENST00000615334 372 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC015967.1-201ENST00000619893 476 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AC073346.2-201ENST00000624724 2058 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 TAB3P1-202ENST00000452645 1634 ntBASIC3.77□□□□□ -1.81
VPS4AQ9UN37 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 159.4 ms