Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 U8.3-201ENST00000363321 132 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 RNU6-770P-201ENST00000363929 105 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 RNU2-6P-201ENST00000411404 190 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC139712.2-201ENST00000424302 339 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC133104.1-201ENST00000429100 218 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC132479.1-201ENST00000449160 144 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 VN1R17P-201ENST00000472048 1090 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC023194.1-201ENST00000493084 308 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 RN7SL504P-201ENST00000494496 287 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC108471.1-201ENST00000513977 287 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 RNA5SP401-201ENST00000515920 127 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 PSMA2P1-201ENST00000526365 646 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 AL162373.1-201ENST00000620433 407 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 CDC27P2-201ENST00000425026 1922 ntBASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL17A1Q9UMD9 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 Y_RNA.112-201ENST00000363250 102 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 MTND5P28-201ENST00000438005 1594 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC006517.1-201ENST00000480485 328 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC006390.1-201ENST00000508068 283 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 Vault.1-201ENST00000516474 102 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 MTND6P33-201ENST00000571794 183 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC006023.1-201ENST00000603944 259 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 PRR13P7-201ENST00000605538 430 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 RNU6-87P-201ENST00000607561 108 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC013412.1-201ENST00000610687 192 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC107871.2-201ENST00000612894 502 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 AC006484.1-201ENST00000435086 1884 ntBASIC5.73□□□□□ -1.49
COL17A1Q9UMD9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 ZNF807-201ENST00000328088 1707 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RNU6-1159P-201ENST00000362933 107 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 Y_RNA.81-201ENST00000362997 102 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RNU6-99P-201ENST00000364721 107 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 HMGB1P17-201ENST00000403495 628 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RPS3AP52-201ENST00000435639 297 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RPL17P49-201ENST00000443728 411 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC104058.1-201ENST00000448028 297 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC107399.1-201ENST00000451226 265 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 MTND1P12-201ENST00000455231 147 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RPL21P11-201ENST00000461458 483 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RNU2-46P-201ENST00000517038 113 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC011468.4-201ENST00000603942 409 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC141273.2-201ENST00000618989 130 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 MIR7702-201ENST00000621931 59 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 MTCO1P24-201ENST00000515438 1558 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 AC092435.3-201ENST00000565538 3654 ntBASIC5.72□□□□□ -1.49
COL17A1Q9UMD9 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC073343.1-201ENST00000328239 651 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 Y_RNA.159-201ENST00000363674 87 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 SNORA69-201ENST00000383895 132 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 RNU6-769P-201ENST00000384407 104 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 RNU2-22P-201ENST00000411266 212 ntBASIC5.71□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms