Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORD70.1-201ENST00000391007 85 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 NDUFS5P1-201ENST00000405668 289 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 PDSS1P1-201ENST00000422953 1114 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 Z74021.1-201ENST00000423610 407 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RPL21P91-201ENST00000429231 479 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 CYCSP43-201ENST00000438233 310 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 TXNP1-201ENST00000441872 371 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AL590399.6-201ENST00000446396 307 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AC104058.1-201ENST00000448028 297 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RPL30P15-201ENST00000457129 321 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU7-167P-201ENST00000459160 62 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 DYNLL1P5-201ENST00000467158 270 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AC006499.6-201ENST00000511169 607 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU6-123P-201ENST00000516163 102 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 MTCO3P23-201ENST00000561363 289 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RMST_9.1-201ENST00000619945 193 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 MTND5P19-201ENST00000424872 1794 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RLIMP1-201ENST00000339626 1680 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 Y_RNA.31-201ENST00000362574 102 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 SNORA23-201ENST00000365128 182 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC110754.1-201ENST00000399740 601 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AL592291.1-201ENST00000403830 352 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RNU6-1304P-201ENST00000411374 106 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC108032.1-201ENST00000416706 207 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 snoU13.3-201ENST00000459441 104 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC106872.2-201ENST00000494303 480 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RNU6-352P-201ENST00000516908 107 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 Y_RNA.720-201ENST00000517166 92 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC009902.1-201ENST00000519351 183 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RANP9-201ENST00000519957 271 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC104763.2-201ENST00000604179 382 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AL158196.1-201ENST00000616786 434 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AC010378.1-201ENST00000619270 362 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 CR392039.5-201ENST00000623201 510 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC87Q9NVE4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 SNORA63.1-201ENST00000362493 131 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RNU6-562P-201ENST00000362731 107 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RNA5SP151-201ENST00000365632 117 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 MIR135A2-201ENST00000384854 100 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RNU6-837P-201ENST00000391056 108 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RPLP0P7-201ENST00000416050 667 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 GOT2P5-201ENST00000433995 546 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RPL7L1P1-201ENST00000448259 785 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 AL133547.1-201ENST00000448546 220 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 MRPS31P2-201ENST00000451581 518 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 SNORA14.1-201ENST00000516113 141 ntBASIC5.49□□□□□ -1.53
CCDC87Q9NVE4 RNU6-390P-201ENST00000516259 103 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms