Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRF1Q92994 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
BRF1Q92994 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
BRF1Q92994 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
BRF1Q92994 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 AC093535.2-201ENST00000624769 2326 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.83□□□□□ -1.64
BRF1Q92994 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 RNA5SP513-201ENST00000364648 118 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 EIF4E2P1-201ENST00000393781 255 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 POLHP1-201ENST00000411806 470 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AC092447.6-201ENST00000414578 210 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AL353748.1-201ENST00000440753 474 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AL162389.1-201ENST00000449233 177 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.83□□□□□ -1.64
BRF1Q92994 FGF7P3-201ENST00000454645 303 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AC004801.2-202ENST00000463559 283 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 RPS27AP13-201ENST00000498403 237 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 AC108078.2-201ENST00000510750 236 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 RNU6-566P-201ENST00000516790 107 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.83□□□□□ -1.64
BRF1Q92994 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.83□□□□□ -1.64
BRF1Q92994 AC023575.1-201ENST00000580510 358 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 MIR8059-201ENST00000620427 81 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.83□□□□□ -1.64
BRF1Q92994 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.83□□□□□ -1.64
BRF1Q92994 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRF1Q92994 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.83□□□□□ -1.64
BRF1Q92994 AC068254.2-201ENST00000623938 3577 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AL139811.1-201ENST00000424779 2299 ntBASIC4.83□□□□□ -1.64
BRF1Q92994 AC010300.1-201ENST00000600671 5134 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 AC087190.4-201ENST00000574616 8334 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 DDX10P1-201ENST00000448545 1933 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
BRF1Q92994 RNU6-550P-201ENST00000391057 101 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 SNORA68.2-201ENST00000391263 128 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 MIR548F5-201ENST00000408421 86 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 RNA5SP104-201ENST00000410989 118 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 FAR2P2-201ENST00000413041 594 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 UBE2FP1-201ENST00000416536 447 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.82□□□□□ -1.64
BRF1Q92994 FAR2P4-202ENST00000425399 584 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AL358472.1-201ENST00000431295 329 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 MRPS18BP2-201ENST00000434310 759 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 RPL21P112-201ENST00000434403 463 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.82□□□□□ -1.64
BRF1Q92994 RPL29P29-201ENST00000448725 423 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC234775.1-201ENST00000454247 670 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.82□□□□□ -1.64
BRF1Q92994 snoU13.3-201ENST00000459441 104 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 RPL21P8-201ENST00000465083 535 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.82□□□□□ -1.64
BRF1Q92994 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.82□□□□□ -1.64
BRF1Q92994 IGKV2-38-201ENST00000517443 247 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.82□□□□□ -1.64
BRF1Q92994 AP003730.1-201ENST00000524605 285 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 AC107918.3-201ENST00000533272 382 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.82□□□□□ -1.64
BRF1Q92994 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 AL121576.1-201ENST00000556055 276 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC012182.1-201ENST00000570133 895 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 RN7SL600P-201ENST00000581811 299 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.82□□□□□ -1.64
BRF1Q92994 MIR6748-201ENST00000610433 71 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
BRF1Q92994 AC103705.1-201ENST00000619013 241 ntBASIC4.82□□□□□ -1.64
BRF1Q92994 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.82□□□□□ -1.64
BRF1Q92994 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRF1Q92994 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BRF1Q92994 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
BRF1Q92994 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.81□□□□□ -1.64
BRF1Q92994 XIAPP3-201ENST00000312918 795 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 Y_RNA.187-201ENST00000363918 113 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 Y_RNA.216-201ENST00000364205 93 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 SNORA33.2-201ENST00000365413 134 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 RPL37P10-201ENST00000412884 288 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 RPL30P2-201ENST00000414021 291 ntBASIC4.81□□□□□ -1.64
BRF1Q92994 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms