Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA9-201ENST00000384215 133 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 SNORA48.5-201ENST00000391143 135 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AL590004.2-201ENST00000404787 371 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 MIR1290-201ENST00000408735 78 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 RNA5SP38-201ENST00000410750 119 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.57□□□□□ -2
SKA3Q8IX90 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.57□□□□□ -2
SKA3Q8IX90 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AL831737.1-201ENST00000441288 271 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 MTND5P2-201ENST00000442927 1142 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 FAM103A2P-201ENST00000444122 354 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 UBBP3-201ENST00000445497 241 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
SKA3Q8IX90 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 RPL37P4-201ENST00000448908 268 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.57□□□□□ -2
SKA3Q8IX90 RPL21P41-201ENST00000459863 264 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC072039.1-201ENST00000477611 581 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 LINC00888-204ENST00000487386 421 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC111000.2-201ENST00000507775 550 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 SCGB1D5P-201ENST00000515134 247 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 RNU6-840P-201ENST00000517275 65 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.57□□□□□ -2
SKA3Q8IX90 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.57□□□□□ -2
SKA3Q8IX90 AP000787.2-201ENST00000604432 568 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.57□□□□□ -2
SKA3Q8IX90 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SKA3Q8IX90 AC008568.2-201ENST00000623862 2313 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.57□□□□□ -2
SKA3Q8IX90 AC092125.1-201ENST00000562568 1995 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.56□□□□□ -2
SKA3Q8IX90 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.56□□□□□ -2
SKA3Q8IX90 AC090740.1-201ENST00000623193 2262 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 CUL1P1-201ENST00000509510 2425 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SKA3Q8IX90 SNORA36C-201ENST00000384289 132 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 MIR514A1-201ENST00000385133 98 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 SNORA11.1-201ENST00000408133 129 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 MIR1289-1-201ENST00000408836 144 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AL359704.1-201ENST00000411586 781 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 HMGN2P35-201ENST00000412164 270 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.56□□□□□ -2
SKA3Q8IX90 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.56□□□□□ -2
SKA3Q8IX90 TMEM167AP1-201ENST00000423409 219 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.56□□□□□ -2
SKA3Q8IX90 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.56□□□□□ -2
SKA3Q8IX90 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.56□□□□□ -2
SKA3Q8IX90 S100A11P2-201ENST00000467589 312 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.56□□□□□ -2
SKA3Q8IX90 RNU6-1256P-201ENST00000516539 103 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 RNU6-678P-201ENST00000516832 109 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.56□□□□□ -2
SKA3Q8IX90 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.56□□□□□ -2
SKA3Q8IX90 AC022080.3-201ENST00000544433 482 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC005951.2-201ENST00000576282 495 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AP001004.1-201ENST00000582468 324 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.56□□□□□ -2
SKA3Q8IX90 AC083760.1-201ENST00000589621 670 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AL139344.1-201ENST00000605228 195 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC091965.4-201ENST00000607691 587 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC107214.2-201ENST00000608204 634 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.56□□□□□ -2
SKA3Q8IX90 AP000770.2-201ENST00000623694 100 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 AC112204.3-201ENST00000623822 332 ntBASIC2.56□□□□□ -2
SKA3Q8IX90 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
SKA3Q8IX90 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.56□□□□□ -2
SKA3Q8IX90 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.56□□□□□ -2
SKA3Q8IX90 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.55□□□□□ -2
SKA3Q8IX90 GABRG2-229ENST00000641017 3628 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.55□□□□□ -2
SKA3Q8IX90 SNORA23-201ENST00000365128 182 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 SNORA9.2-201ENST00000365361 133 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RNU1-39P-201ENST00000383897 165 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RNU1-109P-201ENST00000383960 147 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RNU6-432P-201ENST00000384196 109 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.55□□□□□ -2
SKA3Q8IX90 SNORA48.2-201ENST00000390926 124 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
SKA3Q8IX90 RPL23AP39-201ENST00000415533 405 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC008850.1-201ENST00000427546 362 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RPL7L1P10-201ENST00000427790 463 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
SKA3Q8IX90 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 Z96811.1-201ENST00000445880 108 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AP000705.1-201ENST00000454567 350 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AL139824.2-201ENST00000458731 1095 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 RPL30P14-201ENST00000482744 348 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.55□□□□□ -2
SKA3Q8IX90 AIG1P1-201ENST00000503376 148 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.55□□□□□ -2
SKA3Q8IX90 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.55□□□□□ -2
SKA3Q8IX90 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.55□□□□□ -2
SKA3Q8IX90 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.55□□□□□ -2
SKA3Q8IX90 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.55□□□□□ -2
SKA3Q8IX90 AC034105.3-201ENST00000565294 442 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 207.1 ms