Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 RNA5SP291-201ENST00000517222 105 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 SNORA31.26-201ENST00000517250 137 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC123904.2-201ENST00000548059 300 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC012414.6-201ENST00000568241 401 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 PIGPP4-201ENST00000584447 307 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 MIR548AB-201ENST00000584917 84 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC020895.1-201ENST00000595362 272 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC090970.3-201ENST00000612566 866 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC025594.3-201ENST00000613068 790 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC013476.2-201ENST00000614456 459 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AL158063.1-201ENST00000615349 536 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC010149.2-201ENST00000637608 315 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 Z83843.1-201ENST00000604070 3685 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC017071.1-201ENST00000564407 2204 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC007785.2-201ENST00000598627 1916 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 SNORD116-9-201ENST00000384000 95 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 SNORD116-3-201ENST00000384287 95 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 SNORD116-7-201ENST00000384404 95 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 SNORD116-5-201ENST00000384462 95 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RNY3P10-201ENST00000384764 102 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 SNORD17-201ENST00000390930 237 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RNA5SP354-201ENST00000391247 136 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 Y_RNA.598-201ENST00000410480 95 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RPS7P13-201ENST00000413955 498 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 Z85995.1-201ENST00000415547 335 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC104332.2-201ENST00000429959 156 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 TIMM9P1-201ENST00000436122 256 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 MTCO3P45-201ENST00000443036 613 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 ELOCP30-201ENST00000447108 299 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC006539.3-201ENST00000454258 129 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 snoU13.28-201ENST00000459235 104 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 ARL4AP2-201ENST00000507378 601 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RAC1P5-201ENST00000512182 576 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RNU6-840P-201ENST00000517275 65 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AP002748.2-201ENST00000528671 348 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 DEFB108A-201ENST00000530110 222 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 MIR3146-201ENST00000580367 79 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 KC877982.1-201ENST00000602313 470 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC013553.2-201ENST00000604244 589 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC121334.2-201ENST00000605387 271 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AL355365.1-201ENST00000616480 294 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC002064.3-201ENST00000623448 346 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC110079.1-202ENST00000635213 138 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 RIOK3P1-201ENST00000418778 1528 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 AC032011.1-201ENST00000611703 1549 ntBASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NUP54Q7Z3B4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 OR4G2P-202ENST00000641004 1759 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 FGF7P2-201ENST00000332473 296 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RNU4-35P-201ENST00000362588 141 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RNU6-741P-201ENST00000383889 107 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 MIR184-201ENST00000384962 84 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RNU6-278P-201ENST00000390945 109 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AC110754.1-201ENST00000399740 601 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RN7SKP220-201ENST00000410611 288 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AC017079.2-201ENST00000416102 485 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 MTND1P28-201ENST00000435623 950 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AC080014.1-201ENST00000496877 1201 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AC093663.1-201ENST00000497190 394 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 FCF1P8-201ENST00000510322 597 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 CDC42P4-201ENST00000510507 563 ntBASIC3.16□□□□□ -1.9
NUP54Q7Z3B4 RNU6-1256P-201ENST00000516539 103 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms