Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RPL23AP24-201ENST00000458203 385 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 SCARNA10-201ENST00000459255 330 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC027575.1-201ENST00000481064 460 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC008526.1-201ENST00000509149 338 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 TBCAP3-201ENST00000512475 312 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.45□□□□□ -1.7
USP53Q70EK8 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP53Q70EK8 SNORA31.9-201ENST00000516429 84 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC090151.1-201ENST00000520784 730 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.45□□□□□ -1.7
USP53Q70EK8 FAM60BP-201ENST00000578364 658 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
USP53Q70EK8 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP53Q70EK8 MIR5692C1-201ENST00000585309 91 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC093227.2-201ENST00000589357 285 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC080078.3-201ENST00000605407 463 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 ARF4P1-201ENST00000605447 541 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC008785.1-201ENST00000624475 456 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 ZNF519P1-201ENST00000449011 1626 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP53Q70EK8 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP53Q70EK8 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.45□□□□□ -1.7
USP53Q70EK8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP53Q70EK8 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
USP53Q70EK8 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
USP53Q70EK8 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP53Q70EK8 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.44□□□□□ -1.7
USP53Q70EK8 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.44□□□□□ -1.7
USP53Q70EK8 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.44□□□□□ -1.7
USP53Q70EK8 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.44□□□□□ -1.7
USP53Q70EK8 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP53Q70EK8 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.44□□□□□ -1.7
USP53Q70EK8 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP53Q70EK8 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.44□□□□□ -1.7
USP53Q70EK8 RNU6-173P-201ENST00000364215 104 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 AL359837.1-201ENST00000381357 287 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 RNU6-474P-201ENST00000384243 107 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 SNORA37-201ENST00000384504 129 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 MIR659-201ENST00000384963 97 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.44□□□□□ -1.7
USP53Q70EK8 RPS12P10-201ENST00000427031 377 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 RPL23AP69-201ENST00000431134 458 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 RPL23AP93-201ENST00000440847 484 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 AC025164.1-201ENST00000496249 478 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 RPS27P27-201ENST00000498779 255 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 HMGB1P22-201ENST00000505315 124 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.44□□□□□ -1.7
USP53Q70EK8 RPL23AP87-202ENST00000573039 466 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 RN7SL176P-201ENST00000580352 264 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 MIR3171-201ENST00000584270 74 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.44□□□□□ -1.7
USP53Q70EK8 SNRPGP17-201ENST00000603780 214 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 AL080274.1-201ENST00000605565 220 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 MIR15A-201ENST00000607334 83 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 AC034102.8-201ENST00000615146 484 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 ZYXP1-201ENST00000617638 118 ntBASIC4.44□□□□□ -1.7
USP53Q70EK8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.44□□□□□ -1.7
USP53Q70EK8 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP53Q70EK8 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP53Q70EK8 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP53Q70EK8 MIR369-201ENST00000362155 70 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RNA5SP52-201ENST00000362448 134 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RNU1-83P-201ENST00000363426 164 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AL139397.2-201ENST00000404529 772 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RPL5P18-201ENST00000406671 891 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AL513331.1-201ENST00000411908 397 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 SNAP23P1-201ENST00000433229 246 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RPS26P2-201ENST00000440331 348 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RPL37P6-201ENST00000460682 294 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC117503.1-201ENST00000472241 394 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC108860.1-201ENST00000484521 383 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.43□□□□□ -1.7
USP53Q70EK8 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.43□□□□□ -1.7
USP53Q70EK8 MLLT10P2-201ENST00000506434 249 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.43□□□□□ -1.7
USP53Q70EK8 AC079140.5-201ENST00000507882 310 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.43□□□□□ -1.7
USP53Q70EK8 RN7SKP46-201ENST00000515942 234 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 RNU6-927P-201ENST00000516199 100 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.43□□□□□ -1.7
USP53Q70EK8 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP53Q70EK8 ELOCP31-201ENST00000540463 467 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC106785.1-201ENST00000565935 262 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 SNRPGP15-201ENST00000600149 222 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 AC034229.5-201ENST00000624258 185 ntBASIC4.43□□□□□ -1.7
USP53Q70EK8 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP53Q70EK8 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
USP53Q70EK8 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
USP53Q70EK8 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms